Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K09
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   160   3e-40
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.14 
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    27   5.2  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    27   5.2  
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B...    27   5.2  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    27   5.2  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     27   5.2  
Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    26   6.9  
AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf (pumilio...    26   6.9  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  160 bits (388), Expect = 3e-40
 Identities = 73/97 (75%), Positives = 85/97 (87%)
 Frame = -3

Query: 339 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 160
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 159 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 49
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+T
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVT 97


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -3

Query: 282 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 187
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 37   SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 141
            S G C  G CA  +S + + CC  +N  P + V TC S
Sbjct: 895  SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 932


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 37  SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 141
           S G C  G CA  +S + + CC  +N  P + V TC S
Sbjct: 237 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 274


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 37  SPGXCD-GECA--HSVVFSACCS*FNVVPAVVVNTCLS 141
           S G C  G CA  +S + + CC  +N  P + V TC S
Sbjct: 237 SVGGCSSGYCATGYSCIQNQCCPSYNSAPRISVYTCPS 274


>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
           protein T14G10.2b protein.
          Length = 1311

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
           protein T14G10.2a protein.
          Length = 1470

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
           protein T14G10.2b protein.
          Length = 1311

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
           protein T14G10.2a protein.
          Length = 1470

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
           protein.
          Length = 1347

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 525 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 571


>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
           protein.
          Length = 1311

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
           protein.
          Length = 1470

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 357 NEFASKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAK 208
           N+ ++K ++AKK +  +    S L L++K+    LGYK+T+  +   K K
Sbjct: 648 NQQSAKYLSAKKAEDLLTGSLS-LTLMLKNN--VLGYKETIGKIEHNKPK 694


>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 204 PALLCLVEEFSKFACILSNIFPISSP 281
           PAL    EEFSKF  +L  I+P   P
Sbjct: 290 PALNLDSEEFSKFVTLLYAIYPAIDP 315


>AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 11 protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 313 LFLFLCCNHFGSKFI 357
           +FL LCCN FG+ F+
Sbjct: 188 IFLSLCCNMFGNFFV 202


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 315 KTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 199
           KT++ IN  + L       C G+++ L+ L++   KL +
Sbjct: 182 KTLQEINLDIVLSDNEDVTCAGFRELLRFLKEISYKLTV 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,192,178
Number of Sequences: 27780
Number of extensions: 146258
Number of successful extensions: 383
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)