Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K07
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical
           protein Y61B8B.1 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 523 IEYYKEVNFKNLLMNIFSTKLIIFQLQE 606
           + YY  +   +LL NIF   L+IFQ +E
Sbjct: 13  VNYYHFIGISSLLGNIFGIYLLIFQTKE 40


>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 335 INCHIIKLTVLPIFIFIY*CMLF-CNHY 255
           ++CHII    LP++   + C+ + C H+
Sbjct: 27  LSCHIIPFVTLPVYAEAFYCVFYKCKHF 54


>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
            ZK337.1c protein.
          Length = 1516

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 611  YSSCSWNMINLVLNMFIKRFLKFTSL*YSMLEVK 510
            Y     NM+NLV N+ + ++L+ T+   S LE K
Sbjct: 990  YGCGEQNMLNLVPNILVVKYLRATNRNESQLETK 1023


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
            ZK337.1b protein.
          Length = 1501

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 611  YSSCSWNMINLVLNMFIKRFLKFTSL*YSMLEVK 510
            Y     NM+NLV N+ + ++L+ T+   S LE K
Sbjct: 993  YGCGEQNMLNLVPNILVVKYLRATNRNESQLETK 1026


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
            ZK337.1a protein.
          Length = 1508

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 611  YSSCSWNMINLVLNMFIKRFLKFTSL*YSMLEVK 510
            Y     NM+NLV N+ + ++L+ T+   S LE K
Sbjct: 982  YGCGEQNMLNLVPNILVVKYLRATNRNESQLETK 1015


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,659
Number of Sequences: 27780
Number of extensions: 291660
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)