Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K04
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    56   4e-09
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    47   3e-06
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    28   1.6  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   4.8  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.5  

>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 27/65 (41%), Positives = 35/65 (53%)
 Frame = -1

Query: 734 DNAEQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAF 555
           +N  Q    +EE GG+D I DLQ+    +IY  AY IIE+YF+ E+    L P     AF
Sbjct: 459 ENINQYAVYVEEAGGMDMIHDLQSSGNNDIYLKAYSIIEKYFSDEDAVEDLAPETENGAF 518

Query: 554 QFDGG 540
            F  G
Sbjct: 519 TFGNG 523


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/67 (35%), Positives = 35/67 (52%)
 Frame = -1

Query: 707 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAADK 528
           +E+ GG+D I + Q     EIY+ AY+IIE++F  E+E   L P      F F  G   +
Sbjct: 468 VEDAGGMDLIHECQNSSNSEIYQKAYNIIEKFFGEEDEIEELEPETVGDTFTF--GTTQE 525

Query: 527 EPPPFRF 507
               F+F
Sbjct: 526 PAGDFQF 532


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 623 IEQYFAGEEEDASLVPAAGEAAFQFDGGAADKE 525
           IE+  A   E  S VP+AG  A    GGAA  E
Sbjct: 51  IEELIAAGNEKLSTVPSAGAVATPAAGGAAGAE 83


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 532 SAAPPSNWKAASPAAGTSDASSSSPA 609
           S  PPS   +A+PA   + ASS++PA
Sbjct: 60  SGPPPSYSNSAAPATPAASASSAAPA 85


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 355 KLGVHLL*TTNGPVFGETVEEVFIRSLVSGAAS 453
           KL  + + +TN PVFG  V+ V   +++S ++S
Sbjct: 158 KLSSNSIKSTNAPVFGTAVKNVTGENILSASSS 190


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 401 PNTGPLVVYNKCTPSFT 351
           PN GP  +Y +C  +FT
Sbjct: 236 PNYGPFYIYGQCVATFT 252


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 523 GSLSAAPPSNWKAASPAAGTSDASSSSPA 609
           G+ S APP++  + +PA G+   S   PA
Sbjct: 180 GTTSNAPPASSTSTTPATGSGGFSFGKPA 208


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 478 GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 606
           G+  G  P  +  G  S SAAPPS     +P +     +S+ P
Sbjct: 103 GLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPP 145


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 261 VIRPFGSGVEDDVLGTS---RRSGRPRTVSV 178
           V+ PF SG+++   GT+   R+SGR  T S+
Sbjct: 40  VLHPFTSGLDEKASGTASKDRKSGRAGTKSL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,460
Number of Sequences: 5004
Number of extensions: 44407
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)