Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_K04
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 53 2e-07
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 51 1e-06
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 50 2e-06
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 44 1e-04
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 30 1.7
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 29 3.8
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 28 6.7
10_08_0236 + 16078162-16078731 28 6.7
03_05_0198 + 21890523-21891002 28 6.7
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 28 6.7
07_01_0975 + 8223269-8224354 28 8.8
06_03_1207 + 28418473-28421073 28 8.8
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Frame = -1
Query: 710 MIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEED---ASLVPAAGEAAFQF--D 546
MI+E G++KIE+LQ+H+ EIY+ A I+E Y+ EE+D A+ V A A F F
Sbjct: 460 MIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQG 519
Query: 545 GGAA 534
GGAA
Sbjct: 520 GGAA 523
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = -1
Query: 710 MIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDAS-LVPAAGEA 561
M++E G+DKIEDLQ H+ +EIY A ++E Y+ E++ L+P+ E+
Sbjct: 460 MVDEADGLDKIEDLQNHDNVEIYNKAVYVLESYWVQEDDQQPFLIPSVSES 510
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = -1
Query: 710 MIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAAD 531
MI++ G++KIE+LQ+H+ EIY+ A ++E Y+ EE+DA +P+ A F+ G
Sbjct: 483 MIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDA--MPSGDNAQNGFNFGNQQ 540
Query: 530 KEPPPFRF*LG 498
P F G
Sbjct: 541 PNVPSGGFNFG 551
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -1
Query: 707 IEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGE-EEDASLVPAAGEAAFQFDGGAAD 531
I ECGG+DK+EDLQ + IYK+ ++E Y+ E +D +P + ++A + + D
Sbjct: 497 ILECGGLDKLEDLQEVDNDAIYKLVMKLLEGYWDEEVSDDDPNLPTSNDSAETVETASED 556
Query: 530 KEPP 519
P
Sbjct: 557 AAQP 560
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 725 EQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEE 597
+Q ++E GI+ +E Q HE ++ MA ++++YF GE+
Sbjct: 458 KQGPKLVEMEDGIEAMERFQFHENEQMRNMANGLVDEYF-GED 499
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 418 VFIRSLVSGAASVG*AWGQRGVGVGSAPS*KRKGGGSLSAAPPSNWKAASP-AAGTSDAS 594
+F R L+ A G + + + + + GGG+ +A PP W ++P AA + A+
Sbjct: 227 LFSRLLLPHAVGGGGSAAEEEAAIVTCLAAVISGGGAAAAPPPLIWPTSAPEAAFVASAA 286
Query: 595 SSSPA 609
SP+
Sbjct: 287 GHSPS 291
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 478 GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 606
G G G+ PS + G G APPS + S G SS P
Sbjct: 59 GGGYGAPPSTQPYGSGGGYGAPPSTQRPQSYGGGYGAPPSSQP 101
>10_08_0236 + 16078162-16078731
Length = 189
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 439 SGAASVG*AWGQRGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTS 585
+G G GQ G G GS S G GS + +NW +S AG S
Sbjct: 113 AGGGGGGGGQGQAG-GYGSTGSGSGSGSGSGYSNANNNWYGSSAGAGAS 160
>03_05_0198 + 21890523-21891002
Length = 159
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +1
Query: 427 RSLVSGAASVG*AWGQRGVGVGSAPS*KRK-----GGGSLSAAPPSNWKAASPAAGTSDA 591
R A G + G G G GSAP R+ GGG+ A S+W+ + AA
Sbjct: 50 RGFAPAPARGGRSGGDGGRGSGSAPVPARQWSGGGGGGARIRASSSSWREGAAAAAEGHG 109
Query: 592 SS 597
S+
Sbjct: 110 SA 111
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 439 SGAASVG*AWGQRGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 609
SG A G +R G GS+ S + GG + K+A+ A T+ ++SSS A
Sbjct: 339 SGKAREGVVLLRRSSGKGSSGSQSKGGGNAGHERKSKGGKSAAAACSTAASASSSTA 395
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 448 ASVG*AWGQRGVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 609
+ VG G G +PS GGS + PS+ ++SP++ S + SSSP+
Sbjct: 214 SDVGSGSGSAASAPGPSPSDDTGYGGS--SGSPSSSPSSSPSSSPSGSPSSSPS 265
>06_03_1207 + 28418473-28421073
Length = 866
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 220 GHEPSVRPTSNCLCNVCLQIDYVCICLLVNTIFIGFLVVNEKIKMIIVKRCCD 62
G P+V S+ + C CLL++ + L NE I +++K CCD
Sbjct: 695 GLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCD 747
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,622
Number of Sequences: 37544
Number of extensions: 306375
Number of successful extensions: 1454
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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