Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_K04
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 68 8e-12
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 68 8e-12
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 68 8e-12
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 40 0.002
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 40 0.002
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 40 0.002
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 35 0.052
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 35 0.052
AL021387-1|CAE17853.1| 187|Caenorhabditis elegans Hypothetical ... 29 3.4
AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical ... 28 6.0
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 28 7.9
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 28 7.9
AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical ... 28 7.9
AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical ... 28 7.9
AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 28 7.9
AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 28 7.9
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = -1
Query: 728 AEQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 549
AEQV + IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E + V A +AF
Sbjct: 439 AEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGG 497
Query: 548 D 546
D
Sbjct: 498 D 498
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = -1
Query: 728 AEQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 549
AEQV + IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E + V A +AF
Sbjct: 439 AEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGG 497
Query: 548 D 546
D
Sbjct: 498 D 498
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/61 (50%), Positives = 45/61 (73%)
Frame = -1
Query: 728 AEQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQF 549
AEQV + IEECGG+DKIE+LQ HE +IYK+A++II+ +F+ ++E + V A +AF
Sbjct: 348 AEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDNFFSSDDETGN-VEGAQSSAFGG 406
Query: 548 D 546
D
Sbjct: 407 D 407
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = -1
Query: 713 NMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 594
+ +EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 474 DQVEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = -1
Query: 713 NMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 594
+ +EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 474 DQVEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = -1
Query: 713 NMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYF----AGEEE 594
+ +EE GG+D +E LQ + +IY AY II Q+F AGE+E
Sbjct: 474 DQVEENGGLDSLERLQESQSEQIYTQAYRIITQFFTDDDAGEKE 517
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -1
Query: 734 DNAEQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAG 567
DN+ V +EE G +K+E L + ++I+ AY II++++ ++ + P AG
Sbjct: 444 DNSNPVAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDDAPLNDDPFAG 499
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -1
Query: 734 DNAEQVXNMIEECGGIDKIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAG 567
DN+ V +EE G +K+E L + ++I+ AY II++++ ++ + P AG
Sbjct: 444 DNSNPVAIKLEEIGCREKLEFLCESQSVDIHARAYTIIDRFYVDDDAPLNDDPFAG 499
>AL021387-1|CAE17853.1| 187|Caenorhabditis elegans Hypothetical
protein H01A20.2 protein.
Length = 187
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 713 NMIEECGGID-KIEDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGA 537
N++EE ID +++++Q EK+ I + + + + E D S +P AAF F A
Sbjct: 52 NVVEETLKIDGQLKNIQLSEKLGIVRSEINDMMKKTGSEPLDLSKLPPTYAAAFSFLAPA 111
Query: 536 ADK 528
+K
Sbjct: 112 NEK 114
>AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical
protein Y71F9AL.9 protein.
Length = 314
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 433 LVSGAASVG*AWGQR-GVGVGSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSPA 609
L GA+S+ W GV V +A K K + +AAP + A +PA + ++PA
Sbjct: 49 LEDGASSILGGWTTSDGVSVTAAKKKKNKSKKTETAAPETTQSAPAPAKAAPAPTVAAPA 108
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 710 MIEECGGIDKIEDLQTHEKMEIYKMAY---DIIEQYFAGEEEDASLVPAAGEAAFQFDGG 540
M+EE + K+ + E++E+ + D++++YF GE D P F+F+ G
Sbjct: 113 MLEEFKDVLKLARDRLSERIEMTAIESGFRDLVDEYFNGESGDMFTRPDETMDLFRFNAG 172
Query: 539 AADK 528
+ K
Sbjct: 173 SKKK 176
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 692 GIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAA 534
GI+KI D++ E +++ K +E+ A EE+DAS P++ GG A
Sbjct: 20 GIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS--PSSNGEHLPDAGGTA 73
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 692 GIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAA 534
GI+KI D++ E +++ K +E+ A EE+DAS P++ GG A
Sbjct: 20 GIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS--PSSNGEHLPDAGGTA 73
>AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical
protein Y6B3A.1b protein.
Length = 551
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 692 GIDKI---EDLQTHEKMEIYKMAYDIIEQYFAGEEEDASLVPAAGEAAFQFDGGAA 534
GI+KI D++ E +++ K +E+ A EE+DAS P++ GG A
Sbjct: 20 GIEKILADRDIKRKENLQLKKACESALEELKAAEEQDAS--PSSNGEHLPDAGGTA 73
>AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical
protein C44B12.5 protein.
Length = 397
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 490 GSAPS*KRKGGGSLSAAPPSNWKAASPAAGTSDASSSSP 606
G+AP+ G+ AAPP+ W A AA T A++ +P
Sbjct: 346 GAAPAAPSTSWGAAPAAPPT-WGGAPTAAPTWGAANDAP 383
>AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6b protein.
Length = 343
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 638 SCKFPSSHGSANLQSCQYHHTPQSCXQLVRHC 733
S F SSH A L C YH C + C
Sbjct: 129 SSSFQSSHEQAQLMMCPYHQKSGDCNRQDMDC 160
>AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6a protein.
Length = 413
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 638 SCKFPSSHGSANLQSCQYHHTPQSCXQLVRHC 733
S F SSH A L C YH C + C
Sbjct: 129 SSSFQSSHEQAQLMMCPYHQKSGDCNRQDMDC 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,603
Number of Sequences: 27780
Number of extensions: 262219
Number of successful extensions: 889
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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