Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K04
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 224 TSSSTPEPKGRITTLSKKILYRKLLLSV*AKISY 325
           T    PEP GR+   +   L ++L +SV  K+S+
Sbjct: 115 TFEEDPEPFGRVRDHNISALCKELGISVVQKVSH 148


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 532 SAAPPSNWKAASPAAGTSDASSSSPAKY 615
           SAA  ++   + P  G+S  S SSP+ +
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPSSF 99


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 680 IEDLQTHEKMEIYKMAYDIIEQYFA 606
           I   +   K EI   A D +EQYF+
Sbjct: 54  IHGTEPRSKEEILLHAKDFLEQYFS 78


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 713 NMIEECGGIDKIEDLQTHEKME 648
           ++I +CGGIDK    +T EK E
Sbjct: 26  HLIYKCGGIDK----RTIEKFE 43


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 713 NMIEECGGIDKIEDLQTHEKME 648
           ++I +CGGIDK    +T EK E
Sbjct: 26  HLIYKCGGIDK----RTIEKFE 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,469
Number of Sequences: 438
Number of extensions: 3091
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)