Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K03
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509...    30   1.7  
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835...    30   1.7  
02_02_0106 + 6814391-6817007,6817086-6817462                           29   3.0  

>06_03_0836 -
           25249491-25249511,25249883-25250050,25250721-25250920,
           25251000-25251324,25251981-25252045,25252231-25252552,
           25252650-25252730
          Length = 393

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 278 GQVTFLSPHDRSEGDYGVFRFD-SYSFSNDTFHNVLNGCTKTW 153
           G   FL+ HD SEG+  +FR++ +  F+ + F  + NGC K +
Sbjct: 204 GWAPFLAAHDLSEGNILLFRYEGNMVFTVEVF--LQNGCLKEY 244


>05_07_0236 -
           28582157-28582552,28582639-28582911,28583324-28583560,
           28583653-28583694,28583782-28583964,28584393-28584524,
           28585605-28586057
          Length = 571

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 206 NMSQIGIHHNLLHCGHAAIGMLLGRP 283
           N  Q+ IHH+ L CG+A I  +  +P
Sbjct: 326 NSKQVSIHHSNLACGNALINSIKAKP 351


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 580 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 422
           CL +N  H   S   +SSP PT    C N+K        F  KL N ++SL  L
Sbjct: 93  CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,010
Number of Sequences: 37544
Number of extensions: 259337
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)