Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_K02
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.9  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   6.9  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   9.1  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 136 IKINGGRVANN*KCYQNVCIFTHYWKLLH 222
           ++I+ GR+A   KC + VC  T+  +L+H
Sbjct: 335 VEIDRGRIAEPIKCPREVCGATNAMQLIH 363


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 320 LQNIYSTLNNTIHLITRKLYYNTHTPLIF*LKKKQLLNYV--QAKSSII 460
           L N Y T    + L+T  +   T  PL+  +      NY+  QA  SII
Sbjct: 227 LPNYYETSPLVLSLVTEVIINTTLLPLVSYISDPDFFNYLIIQASGSII 275


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 431 LIIVFFLIKKLAVYEYYNIIF 369
           LII FF+   LA + Y+ ++F
Sbjct: 63  LIIFFFITSGLAYFSYFRVLF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,195
Number of Sequences: 5004
Number of extensions: 69002
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)