Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_J22
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 35 0.013
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 29 0.49
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 29 0.64
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 29 0.85
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.5
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 27 2.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.6
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 4.5
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 4.5
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.5
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.9
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 25 7.9
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.013
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 701 LXWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEK 546
L +DE +WVP +G+K E E WL+E + +T + +K ++
Sbjct: 111 LVFDEASGEWVPKWGYKGKNKELETQWLVEEGEKEKKLTSKQVRNTSKKIKR 162
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/57 (28%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Frame = -3
Query: 505 EPKRLKYQGWGFLSLQI---KLLPHSYPQQQV*QKHQRLLLENSKINYPKRKKHAVK 344
+P+++++ LSL + + S P+ + Q HQ++LL+ K+++P+RK+++ K
Sbjct: 133 QPRKMQFLSLEPLSLLLLKDSFINKSNPEYESMQ-HQQILLKKLKLHFPRRKENSWK 188
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 29.1 bits (62), Expect = 0.64
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Frame = +1
Query: 433 DNCVAEALSEVT---GSPTLGILTFLALARFLS-LCNSFFATFSDFSP-----AFFSYIS 585
D CVA A S V GSP G+L + + +F+ L NSF + P +FF +S
Sbjct: 281 DICVASAASGVAVAFGSPIGGVLFGIEVGKFIEILTNSFKEMSGGYDPKMIVYSFFCCLS 340
Query: 586 VIG 594
+G
Sbjct: 341 AVG 343
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 553 DFSPAFFSYISVIGSKFCGTSISQFFSFSAAVFLKPYKGT 672
+F+PA+F YIS + T++++ F F P GT
Sbjct: 1725 NFAPAYFDYISKVFFHELPTALTKIFGFYRVDIRNPTTGT 1764
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 565 AFFSYISVIGSK--FCGTSISQFFSFSAAVFL 654
A+FSY V+ S FCG ++ ++ F +FL
Sbjct: 74 AYFSYFRVLFSSPSFCGNTLYTYYGFDNPIFL 105
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -2
Query: 683 LQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 504
L KW P K+T K +E+ L P T+ + AG+K AKN Q+ + +
Sbjct: 162 LLKWAPQLEVKQTLDRK----FLEL---LGPKTEQ-DAAAGKKKGAKAKNSKQKTVDSGK 213
Query: 503 AKKVKI 486
AK+ KI
Sbjct: 214 AKEQKI 219
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = -2
Query: 341 VHELIPGKERKRKAPIPTPAAEKEYNLNLLD--NILSKRPKIDMDKAVAKSINEEEVKRS 168
V +L K R+ IPT E ++ N N L +D ++KS+N + +S
Sbjct: 224 VRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLDSSSTLSKSVNSKINLKS 283
Query: 167 HEKKNMKPGLGKRKTQGK 114
H+ + ++ T +
Sbjct: 284 HQSSSSVQNSSRKLTSSQ 301
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = -2
Query: 356 ARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLD-------NILSKRPKIDMDKAVAK 198
+RG E IP K K K AA+ + LD ++L+K + ++++A +K
Sbjct: 1841 SRGTERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSK 1900
Query: 197 SIN--EEEVKRSHEKKNMKP 144
E+ + H KK+ KP
Sbjct: 1901 KPGYVEKNKDKGHMKKSKKP 1920
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 659 GFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 504
G KK A K E +L+ +D +GE + +A+N LQ +K + R
Sbjct: 360 GAKKPAIRNAKKMSNEKDDSLNSQSD---SASGEFIKTIARNNLQEIKQVER 408
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 361 FSLGNLSWNFPREAVDAFAT----LAAVDNCVAEALSEVTGSPTLGILTFLALARF 516
F GN W + +D+ + L + +C+ +ALS + L +L A ARF
Sbjct: 220 FQTGNTDWKVCKALLDSASNDDSKLVPLKDCILKALSTSSTKRNLHLLWIEASARF 275
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -2
Query: 275 KEYNLNLLDNILSKRPKIDMDKAVAKSINEEEVKRSHEKKN 153
KEYN ++ ++ KRP + + VA SI+++ +K + K+
Sbjct: 153 KEYNESMQSSVTHKRPLV--TRGVAMSIDDKALKALSDLKS 191
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 596 DPMTDMYEKKAGEKSEKVAKNELQRLKNLAR 504
DP D Y ++A EK+E++A NE Q++ + +
Sbjct: 171 DPFFDSYLEQAFEKAERLA-NEQQKISKVEK 200
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 671 VPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKK 495
+P+Y KT +K + +EV + D + + Y KKA K +V + + R K+
Sbjct: 411 IPVYRTTKTKMKKNRFKYVEVEKLPDLILESYGKKA-PKFLRVFARSSSHIPKMIRRKR 468
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 310 FLSLPGISSCTPLPRASFSLGNLSWNFPREAVDAFATLAAVDN 438
+LS+ G+ S + + N+SWNF V++F + VDN
Sbjct: 266 YLSIKGLFSSSTCLELYELIRNISWNF--IGVESFNSFRDVDN 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,309
Number of Sequences: 5004
Number of extensions: 54014
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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