Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J21
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.34 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.45 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.78 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   3.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 477 CASQCDGISVGLVSAPNLYLCICVRACLCARRPHLPM 367
           CAS+  GI      +PN  + +CV    C RR H P+
Sbjct: 82  CASKYCGIGKECELSPNSTIAVCVCMRKCPRR-HRPV 117


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 340 REKKNHWKIPXKCVFC 293
           R KKN   +P +CVFC
Sbjct: 28  RRKKNKKPLPTECVFC 43


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 293 TEYTFXWDFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTS 445
           T +TF +  PMI  + Y+  I S  +       ++  + ++   +  A+TS
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTS 264


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 438 TRARHLYHHIATHTGRLPF 494
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGEKPY 38


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 442 EPDTYTITLRRTPDVFPLYRYS 507
           EP+    T   TP  FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 462 HIATHTGRLPFV 497
           H+ THTG  P+V
Sbjct: 194 HMRTHTGEKPYV 205


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 450 HLYHHIATHTGRLPFVPLQLNFSYIVK 530
           HL +H+  H G  PF   + ++S + K
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSCVNK 29


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 345 KYVRKKIIGKSQXNVYSVSASSQPEATPRSLAPCTF 238
           KY RKK IG+++  +  V A+   E        C F
Sbjct: 38  KY-RKKCIGETKTTIEDVEATEYGEFPEDEKLKCYF 72


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 221  TFITLMNVHGASERGVAS 274
            TF+TL      S+RG+AS
Sbjct: 1586 TFVTLTKEGELSKRGIAS 1603


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 221  TFITLMNVHGASERGVAS 274
            TF+TL      S+RG+AS
Sbjct: 1582 TFVTLTKEGELSKRGIAS 1599


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,891
Number of Sequences: 438
Number of extensions: 3027
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)