Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_J19
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 61 1e-10
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 37 0.003
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 37 0.003
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 30 0.37
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 27 2.0
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 3.5
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 4.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 8.0
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 61.3 bits (142), Expect = 1e-10
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = -2
Query: 389 RKKARGDVTIRSPGTGKITINKKDI-TYFDDVQSREQVLFPLIFTGMQNRVDVECNVEGG 213
RK ++ V + PGTGK +N YF + R+ ++PL +V V GG
Sbjct: 14 RKSSKATVKML-PGTGKFYVNGSPFDVYFQRMVHRKHAVYPLAACNRLTNYNVWATVHGG 72
Query: 212 GPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKKPGQPGXKEE 48
GP+GQSGA+ I+ L + + Q ++ + D R+ ERKK GQP +++
Sbjct: 73 GPTGQSGAVHAAISKSL-ILQEPSLKQVIKDTHCVLNDKRKVERKKTGQPKARKK 126
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 36.7 bits (81), Expect = 0.003
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Frame = -2
Query: 398 ECLRKKARGDVTIRSP-GTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDVEC 228
+C KK G G I +N ++ R +V P++ G VD+
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64
Query: 227 NVEGGGPSGQSGAIRWGIAWGL----RSFVDKDMLQQMQVA------GLLTRDHRRRERK 78
V GGG Q AIR I+ + + FVD+ +++ A LL D RR E K
Sbjct: 65 RVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPK 124
Query: 77 KPGQPGXK 54
K G G +
Sbjct: 125 KFGGHGAR 132
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 36.7 bits (81), Expect = 0.003
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Frame = -2
Query: 398 ECLRKKARGDVTIRSP-GTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDVEC 228
+C KK G G I +N ++ R +V P++ G VD+
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64
Query: 227 NVEGGGPSGQSGAIRWGIAWGL----RSFVDKDMLQQMQVA------GLLTRDHRRRERK 78
V GGG Q AIR I+ + + FVD+ +++ A LL D RR E K
Sbjct: 65 RVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPK 124
Query: 77 KPGQPGXK 54
K G G +
Sbjct: 125 KFGGHGAR 132
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -2
Query: 407 TTYECLRKKARGDVTIRSPGTGKITINKKDITYFD----DVQSREQVLFPLIFTG 255
T Y C+RK++ + P +GK+ D+ Y D + + +Q+LF + F G
Sbjct: 23 TLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIVESDADDQLLFQVPFAG 77
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 686 QVIRKKATPD-PNGNLQLGGSMWVNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYR 510
++I KK + D N++ + NKD E + LEY +F ++ L + Y
Sbjct: 103 KIIEKKCSSDFLEANVKSQFTTCENKDSKEDYQILHNKRLEYVSFNDELKSLETGQPLYC 162
Query: 509 YKDFIEKFRKPLAVQK 462
++DF +K P A+ +
Sbjct: 163 FQDFQKKVHGPPALSE 178
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 518 SYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVT 363
SY F E P AVQ + + P+ GRA E R+K + D T
Sbjct: 405 SYNQAHFNEAHPPPKAVQGYRFNVFYPDLIGTGRAPTYRIERTRRKNKSDTT 456
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 470 VQKFALEIPKPNYDEEGRAYIT--TYECLRKKARGDVTIRSPGTG--KITINKKDITYFD 303
VQKFA IP+ Y G Y+T C+ V ++ G G K+ N++ + D
Sbjct: 68 VQKFAQNIPENKYVRSG-DYVTIKPKHCMSHDNSWPVALKFMGIGAKKVFDNRQIVCTLD 126
Query: 302 -DVQSREQ 282
DVQ++ +
Sbjct: 127 HDVQNKSE 134
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 357 SYGYIPSSLFP*TLISCNIGSSLFVIIRFWNF 452
+YG +P+S FP IS I + VI+ W F
Sbjct: 162 AYGGLPASQFPRMPISGGITIAYSVILALWMF 193
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 166 PQAIPHLMAPDWPEGPPPSTLHS 234
P H P P PPP LHS
Sbjct: 214 PPKFRHKKVPRGPPSPPPPVLHS 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,324
Number of Sequences: 5004
Number of extensions: 66589
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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