Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J12
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   0.80 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   0.80 
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    24   9.8  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    24   9.8  

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 291 SESIVITNVNVATPTLRHEFYVSILWYNGCYVC 389
           SE++V T + + T TL  EF++     N C +C
Sbjct: 37  SENVVHTTLKLPTSTLSREFWMKDERTNNCSLC 69


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 201  EYKKYKLFDFNYVVLFGPLFFFIVYTSESFSESIVITNVNVATPTLRHEFYVSILWYNG 377
            E+    +FD+ YV+LF  LF  +        +  V  +V++  P+L     + + W NG
Sbjct: 1115 EFDGNYIFDYTYVMLFNLLFTSLPVIIAGCFDQDVDASVSMKNPSLYQRGILGLEW-NG 1172


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +3

Query: 210 KYKLFDFNYVVLFGPLFFFIVYTSESFSESIVITNVNVATPTLRHEFYVSILWYNGCYV 386
           ++ LF F  +V    L F + Y  E++++++ +T V +     +    + +LW   C+V
Sbjct: 109 EWTLFGFWCLVCTLALIF-LTYFYETWTKAVKVTAVGLYNSRKKWVVIIWLLWVVICFV 166


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 301 IDSENDSLV*TIKKNRGPNKTT*LKSKSLYFLYSKI 194
           +DS+ND+L  + + N GPN       K+ +FL S +
Sbjct: 170 MDSQNDTLFTSKQLNNGPNFPV---EKATFFLESNM 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,083
Number of Sequences: 5004
Number of extensions: 15198
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)