Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J12
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905...    27   5.5  
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    27   7.2  

>11_04_0393 +
           17185845-17186042,17189342-17189534,17190513-17190598,
           17191123-17191254,17191930-17192094,17192397-17192687
          Length = 354

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 213 YKLFDFNYVVLFGPLFFFIVYTSESFSESIVITNVNVATPTLRHEFY 353
           + + D N+     P +F + Y   S    +V ++V    PT R  FY
Sbjct: 156 HNVIDLNFWGAVYPTYFALPYLKASRGNIVVTSSVAGRVPTARMSFY 202


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 294 PKTIHLYKQ*KKTGDQIKQHS*NRKAYTFYTQKFHNRHEQCGFQFQ 157
           P  +++ K+  +  +QIKQH+  R A T   +    +HE+  F ++
Sbjct: 565 PDLVNMQKR-GRFENQIKQHNAKRAAMTKEVKSTEGKHEEDDFSYE 609


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,226,627
Number of Sequences: 37544
Number of extensions: 77093
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)