Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J12
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    28   2.8  
Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.    27   4.9  
U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    27   6.4  
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    27   6.4  

>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/61 (19%), Positives = 33/61 (54%)
 Frame = +3

Query: 204 YKKYKLFDFNYVVLFGPLFFFIVYTSESFSESIVITNVNVATPTLRHEFYVSILWYNGCY 383
           Y  YK+  F++ ++  PL +F+ Y  ++       TN+++    ++    +++++Y G +
Sbjct: 167 YYLYKVSTFSFAIILFPLQYFVNYRMKAMEYD--STNISIVQALIK----ITVMYYFGAF 220

Query: 384 V 386
           +
Sbjct: 221 L 221


>Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical
           protein F08G12.10 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 306 ITNVNVATPTLRHEFYVSILWYNGCYVCXY 395
           + N N   PT  HEF    L ++GC +  Y
Sbjct: 308 LNNKNKMNPTRSHEFIKDYLNFDGCLLLTY 337


>AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 306 ITNVNVATPTLRHEFYVSILWYNGCYVCXY 395
           + N N   PT  HEF    L ++GC +  Y
Sbjct: 308 LNNKNKMNPTRSHEFIKDYLNFDGCLLLTY 337


>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +2

Query: 221 FRF*LCCFIWSPVFFYCLYK*IVFGIYSHYQC 316
           ++F + CF + P+F++  +K I    + + +C
Sbjct: 37  YQFLVACFAFPPLFYFIFFKLIKSSFHGNLKC 68


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +2

Query: 221 FRF*LCCFIWSPVFFYCLYK*IVFGIYSHYQC 316
           ++F + CF + P+F++  +K I    + + +C
Sbjct: 37  YQFLVACFAFPPLFYFIFFKLIKSSFHGNLKC 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,080,021
Number of Sequences: 27780
Number of extensions: 86599
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)