Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J10
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   1.5  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.9  
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.4  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   5.9  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -1

Query: 451  ENINKKKILSVR*ILSECTFCI-SCLNPAIIIFYRLPTEI-IEYISQNIRCSISILKGIC 278
            E +++K+I ++  ILSEC F + +   P    F  L  E+ + Y + ++R S+  L   C
Sbjct: 948  EPLDRKRIDAISVILSECGFVLFNFSQPYYYYFSFLLAEMYLRYGNPSLRYSVMFLASYC 1007

Query: 277  W 275
            +
Sbjct: 1008 F 1008


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 267 WHFQHIPLRIEILHLIF*LIYSIISVGS 350
           W+F H  L++++L +IF   YS++   S
Sbjct: 212 WYFFHFNLQLQLLRVIFLSTYSLVVCNS 239


>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 194 NTYL-GKCESKERCTFDFSAYLT 129
           NT L GK ES+E C F F  Y+T
Sbjct: 36  NTQLYGKVESRELCRFMFQHYIT 58


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 368 NNYILPTSDRDNRI 327
           NN + PTSDRD R+
Sbjct: 502 NNMVFPTSDRDTRL 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,803
Number of Sequences: 5004
Number of extensions: 51788
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)