Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J10
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    28   7.3  
AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine re...    28   7.3  

>Z70212-6|CAA94166.1|  336|Caenorhabditis elegans Hypothetical
           protein R04D3.8 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 413 LSNTQYFFFINIFKIVQPCKRIVLRLLWSVVCSFLYNNFGMF 538
           L+N  Y  F+++F  V  C  ++L+ +W +   F     G+F
Sbjct: 2   LTNEDYLSFLSLFNPVFFCTSVILQTIWLLFIIFHSAKMGIF 43


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 IIIAGLRQLIQNVHSDKIYLTLNIFFLLIFSK*YN-LVNVSY 482
           III G+  L+ N     +YL++N FF ++F   +N L+++ +
Sbjct: 97  IIIFGMNLLVYN-EFQSVYLSINRFFAMLFPLRFNWLLSIKF 137


>AF047657-2|AAK18950.2|  358|Caenorhabditis elegans Serpentine
           receptor, class h protein270 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 411 IYLTLNIFFLLIFSK*YNLVNVSYFDFFGQLSVRFSTIILA 533
           IY+ ++  FLL+ +    L    YF+F+ Q++  F +++LA
Sbjct: 244 IYIQVSAPFLLLSAPVAYLFTTIYFNFYHQVANNFCSLLLA 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,660
Number of Sequences: 27780
Number of extensions: 281101
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)