Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J10
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.4  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.5  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 66  TKKTSKYIYNLSNNYK 113
           T K  K I +LSNNYK
Sbjct: 75  TSKEPKIISSLSNNYK 90


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 66  TKKTSKYIYNLSNNYK 113
           T K  K I +LSNNYK
Sbjct: 75  TSKEPKIISSLSNNYK 90


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 1   LNKKHNKSNNTMTVKAVQXFILPKKLLNT 87
           +NK+H + NN    + +  F   KK   T
Sbjct: 308 INKQHTRGNNFSLSRKLAKFAKEKKAAKT 336


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 488 LLWSVVCSFLYNNFGMFVVSNIHPKNTIISFN 583
           +L S+ C+  + +    V +++ PKN ++S N
Sbjct: 160 ILKSITCALQFCHNAGIVHADVKPKNILMSKN 191


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 313 IRCSISILKGICWKCQLIKF*MSFHYYII 227
           I C   I KG+ W  +++ F   F Y ++
Sbjct: 218 IMCYFCIWKGVKWTGKVVYFTSLFPYALL 246


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 313 IRCSISILKGICWKCQLIKF*MSFHYYII 227
           I C   I KG+ W  +++ F   F Y ++
Sbjct: 271 IMCYFCIWKGVKWTGKVVYFTSLFPYALL 299


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 132 DHNRGLFYNYLTNYKC 85
           D + G    YLTNY C
Sbjct: 62  DISEGNIKKYLTNYSC 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,452
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)