Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J07
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical ...   159   1e-39
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    30   1.5  
Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    29   4.7  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    29   4.7  
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    28   8.2  

>AC006714-4|AAK29715.4|  357|Caenorhabditis elegans Hypothetical
           protein Y119D3B.16 protein.
          Length = 357

 Score =  159 bits (387), Expect = 1e-39
 Identities = 90/231 (38%), Positives = 129/231 (55%), Gaps = 9/231 (3%)
 Frame = -2

Query: 746 PHKXRQKMKEKGVLP-----PRPWMERPXYIXXTGGVFEAYVPPEGDGKAXIVSTSRAKQ 582
           P + R ++ ++G+ P     PR W E         G+ + YVPPE  G    V+    + 
Sbjct: 85  PGEMRTELLKRGINPYKEAQPRVWNEAQVTFQSIYGIADPYVPPENPGSFTDVNNKFDEV 144

Query: 581 TVELLEKKSKSMMA---IRKIKSFDEDYDSKKFISHAQDIYIKAHESLVNNDKRALRLYV 411
              +  K     M    IRK + F E +D K F + A+DIY++AH +L   DK A+  Y+
Sbjct: 145 KQRIQHKFYNWRMGTNRIRKKQGF-EKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYI 203

Query: 410 TEKAYSEFRHNSHLKTIRWKFLESLEPPRVVHARCTDVISKE-NIFGQVTVRFHTRQQLA 234
           TE A+++   +    ++R++ +  LEP RVV  RC D   K  N   Q+TVR HTRQ+LA
Sbjct: 204 TEYAFAKMWPDVENGSVRFELISVLEPSRVVAVRCFDNPPKSGNDIAQITVRMHTRQKLA 263

Query: 233 VYDRFGRLIHGSEILAKDVLEYIVFEKHLSNLYGTWRVHEKIIPDWAPPKE 81
           VYDRFG L+ GSE   KDV+EY+VFE H++ + G WR+H KI P W   K+
Sbjct: 264 VYDRFGGLLLGSEDEEKDVVEYVVFENHIAVVDGEWRLHGKIYPKWIDAKQ 314


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical protein
            C54D10.7 protein.
          Length = 1144

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = -2

Query: 563  KKSKSMMAIRKIKSFDEDYDS--KKFISHAQD-IYIKAHE-SLVNNDKRALRLYVTEKAY 396
            K+ K +M   ++K+    YD+  K F+   ++ + I A+E  +  N  R     + +K  
Sbjct: 1022 KQEKELMT-EEMKNLQIQYDNTGKSFVWKIKESVEIVAYECGIFENVLREYSNKIQQKTL 1080

Query: 395  SEFRHNSHLKTIRWKF 348
            + F H+S  KTI+W+F
Sbjct: 1081 TSFDHDSITKTIKWQF 1096


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 511 SSSNDLILRIAIIDFDFFSKSSTVCLAREVDTIXALPSPSGGTYASKT 654
           S  +D+IL +   DF F   + T   A  V TI +LP+    T+  KT
Sbjct: 262 SRDSDIILGLFRPDFTFKGCAGTYNKAEAVKTIMSLPADKNATFTLKT 309


>Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical
           protein T05G5.9b protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 578 VELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLV-NNDKRALRLYVTEK 402
           VEL +++    + + +     E  +  + +  A D+    +E L+  N++ + +L  +EK
Sbjct: 213 VELSDQQGNEKLGLAR--KMAESENRGRILEEAVDVLKSENEKLLAKNEEFSAKLVSSEK 270

Query: 401 AYSEFRHNSH 372
            ++EF+  SH
Sbjct: 271 EFAEFKKKSH 280


>Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical
           protein T05G5.9a protein.
          Length = 660

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 578 VELLEKKSKSMMAIRKIKSFDEDYDSKKFISHAQDIYIKAHESLV-NNDKRALRLYVTEK 402
           VEL +++    + + +     E  +  + +  A D+    +E L+  N++ + +L  +EK
Sbjct: 215 VELSDQQGNEKLGLAR--KMAESENRGRILEEAVDVLKSENEKLLAKNEEFSAKLVSSEK 272

Query: 401 AYSEFRHNSH 372
            ++EF+  SH
Sbjct: 273 EFAEFKKKSH 282


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 749 PPHKXRQKMKEKGVLPPRPWMERPXYIXXTGGVFEAYVPPEGDGKAXIVSTSRAK 585
           PP + RQK +     P R   + P  +  TGGV  A  PP     + +  +S +K
Sbjct: 540 PPQQQRQKQQRSQPAPARVPPQVPSQVPVTGGV-AADEPPPPCSYSPVAQSSESK 593


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 749 PPHKXRQKMKEKGVLPPRPWMERPXYIXXTGGVFEAYVPPEGDGKAXIVSTSRAK 585
           PP + RQK +     P R   + P  +  TGGV  A  PP     + +  +S +K
Sbjct: 540 PPQQQRQKQQRSQPAPARVPPQVPSQVPVTGGV-AADEPPPPCSYSPVAQSSESK 593


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 672 IXWTLHPRSWWQNTLLLHLLPXFMWW 749
           + W ++P +WW ++ LLH+    ++W
Sbjct: 386 LSWNVYPSTWW-SSALLHVCHVIIFW 410


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 686 ERPXYIXXTGGVFEAYVPPE---GDGKAXIVSTSRAKQTVELLEKKSKSMMAIRKIKSFD 516
           E P Y+  TGG  EA   P    GDG      T + + T  L + +S SM + R   ++D
Sbjct: 390 EEPAYVGATGGFPEASYQPANYGGDGYETYYDTFKKRGT--LKKGESASMASTRADSAWD 447

Query: 515 E 513
           +
Sbjct: 448 Q 448


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 686 ERPXYIXXTGGVFEAYVPPE---GDGKAXIVSTSRAKQTVELLEKKSKSMMAIRKIKSFD 516
           E P Y+  TGG  EA   P    GDG      T + + T  L + +S SM + R   ++D
Sbjct: 390 EEPAYVGATGGFPEASYQPANYGGDGYETYYDTFKKRGT--LKKGESASMASTRADSAWD 447

Query: 515 E 513
           +
Sbjct: 448 Q 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,519
Number of Sequences: 27780
Number of extensions: 325888
Number of successful extensions: 897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)