Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J06
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   1.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.2  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    26   5.6  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   9.7  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 216  GIVTSSPWVASVRFSGLVVKVGALTTLKVIVC 311
            G +TSS +   V    ++ KVGAL  LK+++C
Sbjct: 1005 GCITSSKFEGGVCSGEVLDKVGALILLKMLLC 1036


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 160  VRHCKSTKLEVTEFLSPYKVL*RPRL 237
            + HC  +  E  EFLS  KVL +P+L
Sbjct: 1080 ILHCDDSMNECVEFLSSDKVLNQPKL 1105


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 463 KDGVNVDNTYKDRITRHNRSSGRRLVIKEVWAED 362
           KDGVNVDN  K      N+S+G  ++I E   E+
Sbjct: 82  KDGVNVDNVKK----IENKSTGVAMIIVEETGEN 111


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 111 INLIKATTVVLPRMSTAQNTPKRLFKSLKF-YNGDTPK 1
           I++ K   ++LP+  T  +   +LF SL   YN  +PK
Sbjct: 372 ISIFKRCEIMLPKTCTVAHLLDKLFDSLVLKYNTSSPK 409


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 497 WRNSPSPPKLVQGRCKRGQHLQGSHNPPQQVLWE 396
           W++S +P  L     +       +HNPP  + W+
Sbjct: 316 WQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQ 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,862
Number of Sequences: 5004
Number of extensions: 53925
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)