Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_J05
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 158 3e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 153 1e-38
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.35
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 3.3
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 3.3
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.3
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 25 5.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 10.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 10.0
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 158 bits (384), Expect = 3e-40
Identities = 70/98 (71%), Positives = 84/98 (85%)
Frame = -3
Query: 354 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 175
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 174 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 61
+ +PKLY KL YCVSCAIHS+VVR RS++ RRIRTPP
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPP 98
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 153 bits (370), Expect = 1e-38
Identities = 67/98 (68%), Positives = 83/98 (84%)
Frame = -3
Query: 354 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 175
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 174 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 61
+ +PK+Y KL YCVSCAIH++VVR RS++ RRIRTPP
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPP 98
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.35
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3
Query: 273 RCVPKDKAIKKFVIRNIVEAAAVRDI 196
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 3.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 267 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSK 88
+PKDKA++ RN + A I DA KL A+L V SK + SK
Sbjct: 167 IPKDKAVENNHQRNAEKPVASDKITDA---------KLLARLER-VRAWKESKAKQEASK 216
Query: 87 K-DRRIRTPPQ 58
K + ++ T PQ
Sbjct: 217 KEEHKLNTKPQ 227
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 3.3
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 214 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 333
+ +DV + +L + + L P+A+C + ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 298 FNVTTSMLGASSITAL---TSHVSNLRSGEQ 381
FN+ TS +SS+T+ +SH+SN + ++
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQK 130
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 112 QSCQEQIEERQKNPYSSTRV 53
Q CQ +E+ ++NP S+T V
Sbjct: 103 QGCQRVLEKGKRNPESATNV 122
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 279 CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 184
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 360 RNMTRKRRNGGRAKHG 313
R R RR GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,779
Number of Sequences: 5004
Number of extensions: 26941
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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