Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J04
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.6  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       26   6.4  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    26   6.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   6.4  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
 Frame = -1

Query: 151 LRTFC--CHH----SVKFHLFICNFRYVLYGV 74
           LR+ C  CHH     VK HLF C  + + YG+
Sbjct: 99  LRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGL 130


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = +2

Query: 338  LRSICRSLLEQTTVLSSRSHFCTYFMQ-M*LTFY*S*FIKQ-EKYCIRSSSRYCLG*R*F 511
            ++SI R  L + T+     H  T  +Q + LTF      K+ + Y +R  S +    R  
Sbjct: 847  VQSIIRGFLLRQTLEEKTKHDATLIIQSLWLTFKAHKHYKELQYYAVRIQSLW----RMK 902

Query: 512  KNKY*FTTISMHSTLDSIYYQISYKQNLNIYVRSEDFDN 628
              K   T + + ST  S   Q+SY+    ++  S+  DN
Sbjct: 903  LAKRQLTELKIESTKASHLKQVSYRLESRLFEISKQLDN 941


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 154 KIPAISTIQLKLHFNVSIVNIALSCKSNTLKMFLYKSLYI*QL*TLVT*QEMNQRRVFSE 333
           K+P I     KL  N S++   L  +S   ++  + SL I Q+ T +          FSE
Sbjct: 86  KVPFIQIESRKLVLNPSLLQYFLKDESTLQQISPWMSLLINQVETAILLTMYLDNENFSE 145

Query: 334 SIAKYLP 354
              K+LP
Sbjct: 146 IQKKWLP 152


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 297 LTRNESTKSFFGKYCEVFAVP 359
           +TRNE+ + FF K+C V  VP
Sbjct: 58  MTRNEA-EDFFFKFCTVICVP 77


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 659 IYNIDASNVGNYRNPRNVHIYLDFVCRKSGS 567
           IY+ +  N GNY+   N+ +Y     RK G+
Sbjct: 362 IYDTELENYGNYKAKVNLAVYERLKHRKDGN 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,464
Number of Sequences: 5004
Number of extensions: 57056
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)