Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_J04
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    28   5.9  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    28   7.8  

>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 554 LDSIYYQISYKQNLNIYVRSEDFDNFR--HYWHLCYKLQLSHNTILVNLLHIPGSTTI 721
           L    +Q+++KQ    Y+ S+   N+   HYW +  +L  S++T+L+ +   PG +++
Sbjct: 37  LPGTIFQVNFKQYAG-YLNSDPNKNYNNLHYWLIESQLTPSNDTLLLWINGGPGCSSV 93


>Z82262-5|CAE17771.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.10 protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 527 FTTISMHSTLDSI--YYQISYKQNLNIYVR--SEDFDNFRHYWHLCYKLQ 664
           F +++M S  +SI  Y+ ++   + N+Y +  ++  D F H W LC ++Q
Sbjct: 93  FVSMNMDSAWNSIFLYHNMAEHSDNNMYFKMLNQAEDIFTHTWSLCVEMQ 142


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 554 LDSIYYQISYKQNLNIYVRSEDFDNFR--HYWHLCYKLQLSHNTILVNLLHIPGSTTI 721
           L    +Q+++KQ    Y+ S+   N+   HYW +  +L  S++T+L+ +   PG +++
Sbjct: 37  LPGTIFQVNFKQYAG-YLNSDPNKNYNNLHYWLIESQLTPSNDTLLLWINGGPGCSSV 93


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 554 LDSIYYQISYKQNLNIYVRSEDFDNFR--HYWHLCYKLQLSHNTILVNLLHIPGSTTI 721
           L    +Q+++KQ    Y+ S+   N+   HYW +  +L  S++T+L+ +   PG +++
Sbjct: 37  LPGTIFQVNFKQYAG-YLNSDPNKNYNNLHYWLIESQLTPSNDTLLLWINGGPGCSSV 93


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 439 KLIYKTRKI--LYKKQQQVLFRLKMI*KQILIYYNQYAQHTGFYLLPDFLQTKSKYICT 609
           K+++K +KI  LY+K +Q     +M+ K I +  +   QH  F  L  F +  S Y+ T
Sbjct: 671 KVLWKHQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHISFLELESFKKQISDYLHT 729


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
            protein C09E7.7 protein.
          Length = 995

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 439  KLIYKTRKI--LYKKQQQVLFRLKMI*KQILIYYNQYAQHTGFYLLPDFLQTKSKYICT 609
            K+++K +KI  LY+K +Q     +M+ K I +  +   QH  F  L  F +  S Y+ T
Sbjct: 878  KVLWKHQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHISFLELESFKKQISDYLHT 936


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +2

Query: 527 FTTISMHSTLDSI--YYQISYKQNLNIYVR--SEDFDNFRHYWHLCYKLQ 664
           F +++M S   SI  Y+ ++   + N+Y +  ++  D F H W LC ++Q
Sbjct: 93  FLSMNMDSAWSSIFLYHNMAQHSDNNMYFKMLNQAEDIFTHTWSLCVEMQ 142


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 281 SCQMYKDLYKNIFKVLDLHDKAILTMLTLKCNLSW-IVDIAGILVTYILLSSFSKVSF 111
           +C+ +  LY+ I K    +DK I T++    + S  + D+ G+LV+ IL  +  + +F
Sbjct: 97  TCKRFVLLYRKILKTHFFNDKFIYTVIIFTQSSSLRLSDMFGLLVSCILAFTVPESAF 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,597
Number of Sequences: 27780
Number of extensions: 309419
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)