Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I22
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 271 6e-74
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 261 9e-71
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 0.74
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.7
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.0
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 4.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.2
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.9
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.2
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.2
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 271 bits (665), Expect = 6e-74
Identities = 128/188 (68%), Positives = 156/188 (82%), Gaps = 2/188 (1%)
Frame = -2
Query: 775 YKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHL 602
YKNV+GARR+SWR++SSIEQK E G+ + ++ KEYR K+E+EL I D+L +L+KHL
Sbjct: 51 YKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHL 110
Query: 601 IPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHP 422
IP A++ ESKVFY KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHP
Sbjct: 111 IPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHP 170
Query: 421 IRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNL 242
IRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNL
Sbjct: 171 IRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNL 230
Query: 241 TLWTSDTQ 218
TLWTSD +
Sbjct: 231 TLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 261 bits (639), Expect = 9e-71
Identities = 123/188 (65%), Positives = 152/188 (80%), Gaps = 2/188 (1%)
Frame = -2
Query: 775 YKNVVGARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHL 602
YKN++GARR+SWR+ISSIEQK E G+ R+ + KEYR K+E EL +I +DVL +L+KHL
Sbjct: 50 YKNIIGARRASWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHL 109
Query: 601 IPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHP 422
IP A+ ESKVFY KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P
Sbjct: 110 IPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDP 169
Query: 421 IRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNL 242
+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNL
Sbjct: 170 MRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNL 229
Query: 241 TLWTSDTQ 218
TLWTSD +
Sbjct: 230 TLWTSDAE 237
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.74
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = -2
Query: 721 EQKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 545
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 544 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 434
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = -2
Query: 703 SERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAE 524
S + ++ + YR+ ++ E ++ L A++ E + + RY+
Sbjct: 994 SIKSHELHEAYRLVKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECCRYIVA 1053
Query: 523 VATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 392
++ E R ED+++A + ++ + A +QP H I L LA+N S
Sbjct: 1054 LSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 65 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 193
L + SV+I +TFS V+R L +T + VCW C L+ A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 718 QKTEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPK 593
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 619 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 482
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 772 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 656
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 481 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 308
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 307 DTLNEDSYKDSTLIMQLLRDN 245
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.9
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = -2
Query: 739 RVISSIEQKTEGSERKQQMAKEYRVKVEKE-LREIXYDVLGL--LDKHL---IPKASNPE 578
+V+SS + E S + + R E E L E+ +V L +D+ +P+ NP
Sbjct: 263 KVLSSSSEDDESSSPEDLLKPIIRSTEEMENLNELEQEVQDLDPIDEGFEEKVPRFRNPS 322
Query: 577 SKVFYLKMKGDYYRYLA--EVATGETRHSVVEDSQKA 473
K FY K+ R + E T E +++ S+ A
Sbjct: 323 KKAFYEKLHSLRNRSYSKLESLTSEKSDTLITKSELA 359
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 428 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 529
C L+F L + K+ L+ I+Y + GFS H C
Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 700 ERKQQMAKEYRVKVEKELREIXYDV--LGLLDKHLIPKASNPE 578
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,821
Number of Sequences: 5004
Number of extensions: 57195
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -