Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I17
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 31 0.21
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 31 0.21
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 30 0.37
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.0
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 27 2.0
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 4.6
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 6.0
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 6.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.0
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 6.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.0
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 30.7 bits (66), Expect = 0.21
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = -1
Query: 429 RGTQHERMETDSTPGTSTMELSDSLQTELLKEFTSTDSPDLFS---TDESLIEIKIDKSD 259
RGT+ E + P T E +L L E + T SP++ T ++ + ++ K +
Sbjct: 478 RGTKGSPKEPKAKPSTERPETHRTLSYSRLSELSKTFSPEIREPSLTKKTAVSMQESKEE 537
Query: 258 PSDNTGCHSQLSNCTSKLFDEMQKLDEED 172
+ S+ S +S D +K D +
Sbjct: 538 GRSDESSESEESGSSSDESDNSEKEDRSN 566
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = -1
Query: 423 TQHERMETDSTPGTSTMELSDSLQTELLKEFTSTDSPDLFSTDESLIEIKIDKSDPSDNT 244
T + ETDS E +DS +TE E T + D+ + + IE+ DK + +D+
Sbjct: 456 TDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVD-DKEEKTDSK 514
Query: 243 GCHSQLSNCTSKLFDEMQKLDE 178
++ SK +E D+
Sbjct: 515 ETADKVEQTDSKDTNEKPAKDD 536
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 29.9 bits (64), Expect = 0.37
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = -1
Query: 591 RDHIVDVYNALAKCGVTVGQLYRLIVRFSKTNVLRSDLYDFLHQVLRDGEVDKLRGTQHE 412
R H+ +V+ A+ GV + L R+ ++ LYD G +K ++
Sbjct: 207 RCHLENVWQAVYTAGVLLPSPVSLS-RYMHRSLNWKKLYDIGFAPFPLGSTEKKETAKYH 265
Query: 411 RMETDSTPGTSTMELSD--SLQTELLKEFTSTDSPDLFSTDE 292
TPG MEL D ++Q+ L + + LFS +E
Sbjct: 266 LPPNTQTPGLRPMELKDVPAVQSLLSQYMERFELAHLFSEEE 307
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.0
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Frame = -1
Query: 414 ERMETDSTPGTSTMELSDSLQTELLKEFTSTDSPDLFSTDESLIEIKI--------DKSD 259
E + S +S E ++TE KE +S S S +E +KI D S
Sbjct: 109 ESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSS 168
Query: 258 PSDNTGCHSQLSNCTSKLFDEMQKLDEE--DGLTNLSMPQESPLEQNASRDGDLPKRPAD 85
S ++ S+ S+ S+ +E+ + EE +G + S ES ++S GD +D
Sbjct: 169 ESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESS-SDSSSESGD-SDSSSD 226
Query: 84 ATSELKARVNRK 49
+ SE + +K
Sbjct: 227 SESESSSEDEKK 238
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 448 VSQHLMQKIVKVRPEYIRF*ETNNESVQLTDGDAALGQRVVHV 576
VS+ L++K + EY++F + NN+ D L +R+ +
Sbjct: 33 VSRVLIEKARSLSSEYLQFHQVNNKDQSAMTNDTDLAKRIARL 75
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.6
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Frame = -1
Query: 450 DGEVDKLRGTQHERMETDSTPGTSTMELSDSLQTELLKEFTSTDSPDLFSTDESLIEIKI 271
+ +V++ G + ++ ++T S + + E ST SP+ T E++++ +
Sbjct: 44 NNQVNEPTGNDNTQV-VENTEDISASNVVSAEGAEASTGDASTQSPE---TSENVVKNSV 99
Query: 270 DKS---DPSDNTGCHSQLSNCTSKLFDEMQKLDEEDGLTNLSMPQESP-LEQNASRDGDL 103
D+S P + + +K E++K E + + + QE LE+ DL
Sbjct: 100 DESVAEKPEKEDLAVIESEDKAAKPDGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDL 159
Query: 102 PKRPADATSELKARVNRKITDYFSKK 25
++ ELK R+N DY + K
Sbjct: 160 NEQKDKKIKELKERINDLTYDYETLK 185
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 390 PGTSTMELSDSLQTELLKEFTSTDSPDLFS 301
PGT L+ ++ TEL EF S P+L +
Sbjct: 697 PGTGKTLLAKAVATELSLEFVSIKGPELLN 726
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 360 SLQTELLKEFTSTDSPDLFSTDESLIEIKIDKSDPSDNT 244
SL++ L E + DSPD+F L E I+ S PSD +
Sbjct: 374 SLRSLALPEIVAIDSPDIF-----LNEDHINSSGPSDTS 407
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 126 SVP--EATLGA*TSSSARLPHPASASRQTTLTYSLTVASDSQCCHSD 260
SVP +T ++ + +PH +S + TTLT S T +S + SD
Sbjct: 123 SVPPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSSSD 169
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 467 CIRC*ETGRWISSGELSTSAWRPTQHRVRRQWNCPTPYRRNYSKSLHRP 321
C RC + G WI + + + RV+R P R++ K++ RP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIP----RSFLKNVERP 229
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 6.0
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Frame = -1
Query: 483 DLYDFLHQVLRDGEVDKLRGTQHERMETDSTPGTSTMELSDSLQTELLKEFTSTDSPDLF 304
D D L++ L E++ ++ + MET T+E ++ + +KE + T +
Sbjct: 285 DFMDSLNKKLST-ELESIKEASRKEMETHCAT-IQTLE-NEVKEARKVKEESLTLANKFS 341
Query: 303 STDESLIEIKIDKS-------DPSDNTGCHSQLSNCTSKLFDEMQKLDEEDGLTNLSMPQ 145
DE E+ + K +NT SQL +L +E+ KL + + Q
Sbjct: 342 DYDEIKRELSVLKQIEFSGEHATHENTSLESQLLKREKQLSEELAKLRSTNAQLTDRITQ 401
Query: 144 ESP----LEQNASRDGDLPKR 94
ES LEQ AS ++ ++
Sbjct: 402 ESKKASFLEQKASEQEEVIRK 422
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 318 SPDLFSTDESLIEIKIDKSDPSDNTGCHSQLSNCTSKLFDEMQKLDEE-DGLTNLSMPQE 142
SP +FS+DES + ++ D ++ + +N TSK Q +E+ L+N + Q+
Sbjct: 139 SPSIFSSDESFLIVEGDDFSLGNSV---EEDANATSKEDPAYQNTNEQIQPLSNFDISQQ 195
Query: 141 SPL 133
L
Sbjct: 196 EYL 198
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 547 AALGQRVVHVDDVVPELRVAEREVSEG 627
AA R+VH+D+ + L+ +R EG
Sbjct: 245 AARKSRIVHIDEAIDRLKEVKRRRIEG 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,112
Number of Sequences: 5004
Number of extensions: 49365
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -