Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I17
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 34 0.13
01_06_1261 - 35826513-35828941,35829201-35829294 30 2.1
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 29 2.7
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 2.7
03_06_0645 - 35257045-35257113,35257332-35257394,35257486-352576... 29 3.6
09_06_0145 + 21162308-21163666 29 4.8
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 29 4.8
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718... 28 6.3
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 28 6.3
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 28 8.3
11_06_0681 + 26248299-26248838,26249089-26249222,26250245-262506... 28 8.3
06_03_1390 - 29831098-29831514,29831613-29831735,29832238-298325... 28 8.3
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/88 (31%), Positives = 40/88 (45%)
Frame = -1
Query: 354 QTELLKEFTSTDSPDLFSTDESLIEIKIDKSDPSDNTGCHSQLSNCTSKLFDEMQKLDEE 175
Q E L ST SP+L ++D L +I + S GC QLSN L+ Q+
Sbjct: 687 QVEFLSMKLSTISPEL-NSDLDLQDILCSQDARSAFLGCSPQLSNAHPNLYRAAQQCLSP 745
Query: 174 DGLTNLSMPQESPLEQNASRDGDLPKRP 91
GL S+ +P + + +R G L P
Sbjct: 746 PGLYG-SVCVPNPADVHLARAGHLASFP 772
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -1
Query: 363 DSLQTE--LLKEFTSTDSPDLFSTDESLIEI-KIDKSDPSDNTGCHSQLSNCTSKLFDEM 193
DSL+ E L E +S S L +E L I +I KS S+N H QL+ L D +
Sbjct: 367 DSLEDEKAALIEDSSKLSERLKQVEEVLQTIQRIGKSVHSENGNIHQQLTEVDDSLNDFV 426
Query: 192 QKLD 181
+KLD
Sbjct: 427 KKLD 430
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Frame = -1
Query: 363 DSLQTELLKEFTSTDSPDLFSTDESLIEIKIDKSDPSDNTGCHSQLSNCTSK-------L 205
D ++ E + E ++ + +E E + D SD SD++ S S+ +S+ +
Sbjct: 320 DDVELEDVDEEIGEENAEEEEGEEGADEEENDSSDDSDSSNSSSDNSSDSSESDDSKTLV 379
Query: 204 FDEMQKLDEEDGLTNLSMPQESPLEQNAS 118
D ++LDE+D +LS +P+ +AS
Sbjct: 380 IDSDEELDEDDIRIDLSAIHVTPIRADAS 408
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = -1
Query: 438 DKLRGTQHERMETDSTPGTSTMELSDSLQTELLKEFTSTDSPDLFSTDESLIEIKID 268
D L+ TQ E+++ S STME + L ELL + +S +TDE + E KI+
Sbjct: 509 DVLQKTQ-EKLDVTSNQLVSTMEAREDLNKELLDAYKKLES----ATDELVRERKIN 560
>03_06_0645 -
35257045-35257113,35257332-35257394,35257486-35257623,
35257987-35258056,35258218-35258361,35258523-35258641,
35258958-35259062,35259301-35259505,35259620-35260140
Length = 477
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 705 WGCGAFGGSP 676
WGCGAFGG+P
Sbjct: 412 WGCGAFGGNP 421
>09_06_0145 + 21162308-21163666
Length = 452
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -3
Query: 526 PTHCSFLKNECTQVGPLRFFASGVERRGGG*AQGNSARAHGDRLNTGYVD 377
P+ K +G R FA V R GGG +G HG RL VD
Sbjct: 52 PSVADIEKGLAAVLGVYRLFAGQVVRGGGGELRGVVLNDHGARLVEACVD 101
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 446 GRWISSGELSTSAWRPTQHRVRRQWNC 366
G W+S+GE S W+ RV R +C
Sbjct: 318 GEWLSAGEHSGHTWKAWSERVERIRSC 344
>02_05_0831 -
32071280-32071403,32071528-32071706,32071786-32071893,
32071987-32072109,32072480-32072608,32072998-32073281,
32073783-32074094,32074208-32074340
Length = 463
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 288 LIEIKIDKSDPSDNTGCHSQLSNCTSKLFDEMQKLDEEDGLTNLSM 151
L E+K + SD+ G + + + L DE+++L DGL N ++
Sbjct: 66 LDEVKASSASDSDSGGRSEEDAERLASLLDELRELCSGDGLENAAV 111
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 28.3 bits (60), Expect = 6.3
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = -1
Query: 399 DSTPGTSTMELSDSLQTELLKEFTSTDSPDLFSTDESLIEIKIDKSDPSDNTGCHSQLSN 220
D PG T S TEL + T P+L E IKI + + T N
Sbjct: 400 DIDPGIPTTPGPQSA-TELDPKIPQTPRPNLKEAGEKRTSIKIVVDEDAKPTRSAGDAEN 458
Query: 219 CTSKLFDEMQKLDEEDG--LTNLSMPQESPLEQNASRDGDLPKRPADATSEL 70
T + M+K E G LT++ + ++ ++ + D+P++ SEL
Sbjct: 459 LTEDVAKVMEKNAGEPGRSLTSI-LSRKISRKKPEDKLSDIPEQTEAQASEL 509
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 294 ESLIEIKIDKSDPSDNTGCHSQLSNCTSKLFDEMQKLD 181
E+ ++I+ S + T C S+ +NCTS D +QK D
Sbjct: 516 ETAVDIENSLSGETSGTVCSSEGNNCTSAT-DSLQKSD 552
>11_06_0681 +
26248299-26248838,26249089-26249222,26250245-26250630,
26250781-26251283,26251335-26251538
Length = 588
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 457 VERRGGG*AQGNSARAHGDRLNTGYVDNGTVR 362
VE GGG N+A AHGDR GY G R
Sbjct: 197 VEEIGGGSTTNNAAYAHGDR---GYAAPGKSR 225
>06_03_1390 -
29831098-29831514,29831613-29831735,29832238-29832501,
29833313-29833654
Length = 381
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 73 FRSRICGSLGQIAVATRVLFQRRLLGHRQ 159
FRS G G++ +A + L QR L GH+Q
Sbjct: 90 FRSAAGGGGGRVVLAVKRLNQRSLQGHKQ 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,592
Number of Sequences: 37544
Number of extensions: 352452
Number of successful extensions: 1329
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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