Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I15
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653...    30   2.0  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   3.6  
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831     28   8.3  

>01_01_0836 +
           6527902-6528218,6529280-6529632,6529722-6529889,
           6530004-6530051,6530142-6530372,6530435-6530548,
           6530638-6530723
          Length = 438

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 475 PPYRVRLQKQPGPPRAPVRAALEFRPLRHPTSRKR 579
           PP R R ++Q  PP AP  A    RP   P +R+R
Sbjct: 27  PPPRKRARRQAAPPAAPAPAPAPARP--SPAARRR 59


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 445  RLPQAWLAGRPPYRVRLQKQPG 510
            R P+ WL  +PP RV LQK  G
Sbjct: 1038 RSPEHWLKNQPPKRVELQKALG 1059


>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
          Length = 418

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 361 GGT--SACTSA*IRAAWALMSRWGSLVVEVRLPQAWLAGR 474
           GGT   A TSA   AA   +   G  V   R+P+ W  GR
Sbjct: 341 GGTVREAATSARCEAAMGALYALGVAVYAARVPERWFPGR 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,102
Number of Sequences: 37544
Number of extensions: 293817
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)