Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I13
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    29   0.44 
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    28   1.4  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   3.1  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   5.5  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    26   5.5  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   7.2  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   9.5  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   9.5  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   9.5  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 111 NNYYRTNNVFLSTLLFHYFPF 49
           N++YR+   F  T +FHY PF
Sbjct: 642 NHFYRSTMFFYMTYVFHYLPF 662


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = -1

Query: 380 PFCIVIFHDCILLLFIFMYLSVFEI*IRLSQKLIFVEL*HARREALFQFPMLYSTLDKKI 201
           PFC+++F     + ++  +LSV+ + I +   ++F+        A    P+LY     KI
Sbjct: 134 PFCLMLFSSHEKMNYLHRWLSVYAVLISVLHGILFMIF-----SAQSYKPLLYD----KI 184

Query: 200 SNIQRHYTVIVLFLL 156
           S I  ++  +VLFL+
Sbjct: 185 S-IYGYFITVVLFLM 198


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = -2

Query: 361 FMIVFYYYLFLCTCQYLRYEYDYHKSLYLLNCNTLDVKLYFNSQCYILRL--IRKSRIFK 188
           F+  FY   F C  + L+   DYH   + +      +  Y      +L+L    ++++F+
Sbjct: 301 FLPAFYDVYFQCRTRLLKPVLDYHLKSFFME---KSISSYIQKSLALLQLTFFDENKLFR 357

Query: 187 DI-ILS*FYFF-Y*RKLC 140
           +I I+  F F  Y   LC
Sbjct: 358 EILIMDDFRFMHYWNNLC 375


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 501 NKFCKAHSHINKSVKTNE-NSLSEFDSLYL 587
           + F ++HSH+  S+++NE N  S   S++L
Sbjct: 464 SSFGRSHSHLGTSLRSNELNGSSASSSIFL 493


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 519 GLYKICLSNNDMYLNFKLYGFLLVSFSYC 433
           GL+ ICLS   +  NF    FL  S S+C
Sbjct: 167 GLFIICLSATVLSSNFAWAAFLGFSASFC 195


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 642 VVFIGGIVLFYLKVK*RPINITNQIRLKNSH 550
           VVF  GI+ F++     P N+  +IR  N +
Sbjct: 376 VVFRDGIITFHMNPTPHPANVRRRIRQLNGY 406


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 520 IHTLTNLLRRMRIL*ANLIRYIY 588
           I TL NLL   R+L A LI Y+Y
Sbjct: 398 IFTLPNLLTFSRLLSAPLIAYLY 420


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 403 ELSATRKLRFA*SFFMIVFYYYLFLCTCQYL-RYEYDYHKSLYLLNCNTLDVKLY 242
           ++ AT KL  A     I++ +Y  LC C Y+  Y+   H S+++     +   L+
Sbjct: 441 DILATWKLLVALGMTPILYSFYALLC-CYYIYSYKLIPHSSIFVYTVPIISTFLF 494


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 495 LINKFCKAHSHINKSVKTNENSLSEFDSLYLWAF 596
           L++K+  + S  NK  + ++NS  E  +  LW +
Sbjct: 350 LVSKYASSLSTTNKFSEDDDNSQIEIPTTLLWTY 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,144
Number of Sequences: 5004
Number of extensions: 41869
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)