Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I13
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p pro...    29   4.2  
AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA...    29   4.2  
AF096866-1|AAC72971.1|  487|Drosophila melanogaster bicoid-inter...    29   7.3  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    29   7.3  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    29   7.3  

>AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p
           protein.
          Length = 1712

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 480 NTCRYLINKFCKAHSHINKSVKTNENSLSEFDSLYLWAFI*LSNRTKRCLQ 632
           N  R+      K HSH+ + VK+ + S + F S   W    LS + ++ L+
Sbjct: 256 NVARFHAETLGKLHSHVQEFVKSLQQSWALFPSSLRWLLQTLSQQLRQSLR 306


>AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA
           protein.
          Length = 1712

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 480 NTCRYLINKFCKAHSHINKSVKTNENSLSEFDSLYLWAFI*LSNRTKRCLQ 632
           N  R+      K HSH+ + VK+ + S + F S   W    LS + ++ L+
Sbjct: 256 NVARFHAETLGKLHSHVQEFVKSLQQSWALFPSSLRWLLQTLSQQLRQSLR 306


>AF096866-1|AAC72971.1|  487|Drosophila melanogaster
           bicoid-interacting protein 4 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -2

Query: 238 NSQCYILRLIRKSRIFKD 185
           NSQCY L++++KS++ +D
Sbjct: 186 NSQCYALKVLKKSKLIED 203


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
           isoform A protein.
          Length = 1618

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 169 TMTV*CL*IFEIFLSSVEYSIGN*NKASRLACYNSTNISFCDNRIHISNTD 321
           T+T+ CL +F +F   V Y     NK  R    + TN+S  D +I +++TD
Sbjct: 247 TLTIFCLMVFALFALQV-YMGELRNKCVRQVPTDWTNVSHTDWQIWVNDTD 296


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
           isoform B protein.
          Length = 2327

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 169 TMTV*CL*IFEIFLSSVEYSIGN*NKASRLACYNSTNISFCDNRIHISNTD 321
           T+T+ CL +F +F   V Y     NK  R    + TN+S  D +I +++TD
Sbjct: 247 TLTIFCLMVFALFALQV-YMGELRNKCVRQVPTDWTNVSHTDWQIWVNDTD 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,215,688
Number of Sequences: 53049
Number of extensions: 360170
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)