Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I13
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 313 LRYEYDYHKSLYLLNCNTLDVKLYFNSQCYILRL 212
           L   Y+Y+ + Y  N N  + KLY+ +  YI+ +
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLYYKN--YIINI 349


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 307 YEYDYHKSLYLLNCNTLDVKLYFN 236
           Y+Y+Y+ + Y  NC     KLY+N
Sbjct: 96  YKYNYNNNNYNNNCK----KLYYN 115


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 307 YEYDYHKSLYLLNCNTLDVKLYFN 236
           Y+Y+Y+ + Y  NC     KLY+N
Sbjct: 96  YKYNYNNNNYNNNCK----KLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 307 YEYDYHKSLYLLNCNTLDVKLYFN 236
           Y+Y+Y+ + Y  NC     KLY+N
Sbjct: 96  YKYNYNNNNYNNNCK----KLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 307 YEYDYHKSLYLLNCNTLDVKLYFN 236
           Y+Y+Y+ + Y  NC     KLY+N
Sbjct: 96  YKYNYNNNNYNNNCK----KLYYN 115


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 367 SFFMIVFYYYLFLCT 323
           SFF+++F Y + L T
Sbjct: 412 SFFIVIFTYIIILIT 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,982
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)