Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I07
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   2.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   3.8  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   3.8  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    24   5.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   8.7  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    23   8.7  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 27  RIHLKHQICLRSLHSPSTEI*CISFCSSHRRTL*RIQTY 143
           R H+       +LH+P+  + C   C+ +   L  I+ Y
Sbjct: 763 RYHVARMALQHALHNPTVAVNCNMLCAKYAWKLEEIENY 801


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 183 CYMKIDPGKKTEKNKSEYVTKYAYDLNKRKCIKF 82
           C++K+      E + +E + + A DL KR  IKF
Sbjct: 413 CHIKVRRNHIFEDSYAEIMRQSATDLKKRLMIKF 446


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 150 EKNKSEYVTKYAYD-LNKRKCIKF 82
           EKN  EY+ K  +D LN++K   F
Sbjct: 264 EKNPKEYILKLLFDHLNRKKTNNF 287


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 156 KTEKN--KSEYVTKYAYDLNKRKCIK 85
           + EKN  K++ + K+ Y LN+++C K
Sbjct: 882 REEKNLGKAQMMLKWLYQLNRKECNK 907


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 143 ISLNTLQSTPMT*TKGNA 90
           + LNTLQSTP + + G+A
Sbjct: 279 LELNTLQSTPTSVSVGSA 296


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 141 KSEYVTKYAYDLNKRKCIKFPYSGYGGNVNRFDALNE 31
           +S+Y+   +YDL  R   +  YS    +  R   LN+
Sbjct: 574 ESDYLLYPSYDLPDRNLSEHSYSSSSDDEQRISELND 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,161
Number of Sequences: 5004
Number of extensions: 25074
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)