Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I06
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 170 2e-43
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 128 1e-30
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 94 3e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 95 1e-20
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 79 6e-16
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 73 4e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 71 2e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 70 4e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 1e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 67 3e-12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 67 3e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 66 6e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 64 2e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 63 3e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 4e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 2e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 59 5e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 59 7e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 58 9e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 55 1e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 49 7e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 7e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 44 2e-05
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 42 6e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 39 8e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 31 0.16
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 30 0.27
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 7.8
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 170 bits (413), Expect = 2e-43
Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 1/225 (0%)
Frame = -2
Query: 685 GLQQGXYICPVEKRMAWLYXXXXXXXXXXXXXXFSSCKSVDFHYEFFRVNCKAIVSSIHG 506
GL+QG + +KR L+ SSC SV + E V +HG
Sbjct: 310 GLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNY-IDLPVLDLHG 368
Query: 505 RQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTA 326
+Q Q +R + F A+ G L CT+VAARGLDIP+VDWIVQYDPP DP++YIHRVGRTA
Sbjct: 369 KQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTA 428
Query: 325 RGMNSKGNAVILLRPXXXXXXXXXXXXXVYLDKYTF-GDPPADIQEFLQKLIKENGVMKV 149
RG G +++ L P V L+++ F + A++Q L+KL+ +N ++
Sbjct: 429 RGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQ 488
Query: 148 LARKAFLSFLRCYKNHPLKSIFNIKNLDLQLASKAFGFDETPHVD 14
A+ + S+L+ Y ++ LKSIF+I LDL +K+FGF P+V+
Sbjct: 489 SAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAKSFGFAHPPNVN 533
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 128 bits (308), Expect = 1e-30
Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 2/224 (0%)
Frame = -2
Query: 682 LQQGXYICPVEKRMAWLYXXXXXXXXXXXXXXFSSCKSVDFHYEFFRVNCKAI-VSSIHG 506
L Q P+ +++ L+ SSCK V F YE FR I + +HG
Sbjct: 258 LNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHG 317
Query: 505 RQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTA 326
+Q Q R E F +++ LFCTD+ ARGLD P+VDW++Q D P D YIHRVGRTA
Sbjct: 318 KQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTA 377
Query: 325 RGMNSKGNAVILLRPXXXXXXXXXXXXXVYLDKYTFGD-PPADIQEFLQKLIKENGVMKV 149
R N GNA++LL P + +++ D I+ LQ L ++ +K
Sbjct: 378 R-YNRSGNALLLLLPSEEAFLKRLESKKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKY 436
Query: 148 LARKAFLSFLRCYKNHPLKSIFNIKNLDLQLASKAFGFDETPHV 17
+ +KAF+S+LR K +F + L ++ + + G TP +
Sbjct: 437 IGQKAFISYLRSIYLQKDKDVFQLDKLPVEAFADSLGLPGTPKI 480
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 94.3 bits (224), Expect(2) = 3e-21
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Frame = -2
Query: 544 RVNCKAIVSSIHGRQSQAKRKEAYHGFVEAQNGA---LFCTDVAARGLDIPSVDWIVQYD 374
R++ K+ V +HG SQ R + F +++ L CTDVAARGLD+P+VD +VQYD
Sbjct: 463 RIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYD 522
Query: 373 PPTDPKEYIHRVGRTARG--------------------MNSKGNAVILLRPXXXXXXXXX 254
P +Y+HR+GRTAR + S +A IL +P
Sbjct: 523 APFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLLSA 582
Query: 253 XXXXVYLDKYTFGDPPADIQEFLQKLIKENGVMKVLARKAFLSFLRCYKNH--PLKSIFN 80
+ + D + Q L++ I EN M+ +A++AF S++R Y H +SIFN
Sbjct: 583 GFSQGKTNTNDWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFN 642
Query: 79 IKNLDLQLASKAFGFDETP 23
+++L L +K+F E P
Sbjct: 643 MRDLHLGHIAKSFALREAP 661
Score = 23.0 bits (47), Expect(2) = 3e-21
Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Frame = -2
Query: 580 SCK-SVDFHYEFFR 542
SC SVDFH+E FR
Sbjct: 420 SCSDSVDFHFEAFR 433
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 94.7 bits (225), Expect = 1e-20
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 11/204 (5%)
Frame = -2
Query: 583 SSCKSVD-FHYEFFRVNCKAIVSSIHGRQSQAKRKEAYHGFVEA-QNGALFCTDVAARGL 410
SSC SV+ F+ F + ++HG+Q Q+ R + F ++ + LF TD+A+RGL
Sbjct: 264 SSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGL 323
Query: 409 DIPSVDWIVQYDPPTDPKEYIHRVGRTARGMNSKGNAVILLRPXXXXXXXXXXXXXVYLD 230
DIP+VD+++Q DPP DPK + HR GR R G A++LL
Sbjct: 324 DIPNVDFVLQLDPPLDPKSFSHRCGRAGRA-GRAGVAIVLLNDGREEEYEELLRVRKV-- 380
Query: 229 KYTFGDPPADIQEFLQKLIKENGVMKVLAR---------KAFLSFLRCYKNHPLKSIFNI 77
T D P + + + + + + K++++ +AF+S +R Y H IF I
Sbjct: 381 PITRIDTPIEALDLSRLKVLTHELRKIVSKDRDLYDKGLRAFVSHVRAYTKHHASFIFRI 440
Query: 76 KNLDLQLASKAFGFDETPHVDXLR 5
K+LDL + A+ P + L+
Sbjct: 441 KDLDLGQLATAYALLHLPKMPELK 464
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 79.0 bits (186), Expect = 6e-16
Identities = 40/75 (53%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = -2
Query: 514 IHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVG 335
+HG+ SQ+ R A + F L TDVAARGLDIP VD ++ YD PTD K YIHRVG
Sbjct: 315 LHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVG 374
Query: 334 RTAR-GMNSKGNAVI 293
RTAR G K A++
Sbjct: 375 RTARAGRAGKSIALV 389
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = -2
Query: 547 FRVNCKAIVSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPP 368
+ +N +SIHG ++Q +R+ A F + + T VA+RGLDIP+V ++ YD P
Sbjct: 449 YLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLP 508
Query: 367 TDPKEYIHRVGRTARGMNSKGNAV 296
TD +Y+HR+GRT R N+ G AV
Sbjct: 509 TDIDDYVHRIGRTGRAGNT-GQAV 531
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/81 (43%), Positives = 46/81 (56%)
Frame = -2
Query: 523 VSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIH 344
V IHG SQ R +A + F + L TDVAARGLDIP V ++ P ++Y+H
Sbjct: 443 VVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
Query: 343 RVGRTARGMNSKGNAVILLRP 281
R+GRT R N+KG A+ P
Sbjct: 503 RIGRTGRA-NTKGTAITFFTP 522
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 69.7 bits (163), Expect = 4e-13
Identities = 33/78 (42%), Positives = 45/78 (57%)
Frame = -2
Query: 514 IHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVG 335
+H + Q KR ++ F G L CTDVAARG+DIPSV ++ Y P Y+HR G
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSG 478
Query: 334 RTARGMNSKGNAVILLRP 281
RTAR N G ++++ P
Sbjct: 479 RTARA-NEDGVSILMCGP 495
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 67.7 bits (158), Expect = 1e-12
Identities = 33/71 (46%), Positives = 42/71 (59%)
Frame = -2
Query: 523 VSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIH 344
V+ +H Q +R + F L TDVA+RGLDIPSV ++ +D P DP +YIH
Sbjct: 285 VTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIH 344
Query: 343 RVGRTARGMNS 311
RVGRTAR S
Sbjct: 345 RVGRTARAGRS 355
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = -2
Query: 514 IHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVG 335
+H + A+R+ F + Q+G LF TDV ARG+D P++ +VQ P++ +YIHR+G
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 334 RTARGMNSKGNAVILL 287
RT R G A ++L
Sbjct: 383 RTGRA-GKTGEAYLIL 397
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 66.9 bits (156), Expect = 3e-12
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = -2
Query: 583 SSCKSVDFHYEFFRVNCKAIVSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDI 404
+S + VD+ E R V+S+HG Q +R F + + L CTD+ ARG+D+
Sbjct: 268 NSRRKVDWLTEKMR-EANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDV 326
Query: 403 PSVDWIVQYDPPTDPKEYIHRVGRTARGMNSKGNAV 296
V ++ YD P + + YIHR+GR+ R KG A+
Sbjct: 327 QQVSLVINYDLPANRENYIHRIGRSGR-FGRKGVAI 361
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 65.7 bits (153), Expect = 6e-12
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = -2
Query: 520 SSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHR 341
+ IHG SQ +R A F + + L TDVA+RG+DI ++ ++ Y+ P + Y+HR
Sbjct: 532 TEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHR 591
Query: 340 VGRTARGMNSKGNAVIL 290
VGRTAR S G A+ L
Sbjct: 592 VGRTARAGRS-GRAITL 607
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = -2
Query: 523 VSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIH 344
V IHG QAKR+EA F + + L TD+ ARG+D V ++ +D P YIH
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
Query: 343 RVGRTARGMNSKGNAV 296
R+GRT R N+ G AV
Sbjct: 375 RIGRTGRAGNT-GQAV 389
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 63.3 bits (147), Expect = 3e-11
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = -2
Query: 523 VSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIH 344
VSS+HG QA+R H F + L TD+ ARG+D+ V ++ YD P + + YIH
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Query: 343 RVGRTAR 323
R+GR R
Sbjct: 345 RIGRGGR 351
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 62.9 bits (146), Expect = 4e-11
Identities = 30/67 (44%), Positives = 40/67 (59%)
Frame = -2
Query: 523 VSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIH 344
VS I+G Q R + F + L TDVA+RG+DIP + ++ YD P PK ++H
Sbjct: 373 VSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVH 432
Query: 343 RVGRTAR 323
RVGRTAR
Sbjct: 433 RVGRTAR 439
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/80 (38%), Positives = 43/80 (53%)
Frame = -2
Query: 520 SSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHR 341
+SIHG + Q R + L T V ARGLD+ S+ +V YD P ++Y+HR
Sbjct: 696 NSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHR 755
Query: 340 VGRTARGMNSKGNAVILLRP 281
VGRT R ++ G AV + P
Sbjct: 756 VGRTGRAGHT-GVAVTFITP 774
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = -2
Query: 517 SIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRV 338
++HG +SQ +R+ A L TD+A RG+DIP+V ++ Y+ ++Y HR+
Sbjct: 545 TLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRI 604
Query: 337 GRTARGMNSKGNAVILLRP 281
GRT R S G A+ L P
Sbjct: 605 GRTGRAGKS-GTAITFLGP 622
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 59.3 bits (137), Expect = 5e-10
Identities = 29/73 (39%), Positives = 39/73 (53%)
Frame = -2
Query: 514 IHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVG 335
IHG Q +R + Y F + TDV RG+DI V+ ++ YD P P Y+HRVG
Sbjct: 325 IHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVG 384
Query: 334 RTARGMNSKGNAV 296
R R +KG A+
Sbjct: 385 RAGR-FGTKGLAI 396
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 58.8 bits (136), Expect = 7e-10
Identities = 26/73 (35%), Positives = 45/73 (61%)
Frame = -2
Query: 517 SIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRV 338
+IHG ++Q +R + F ++ + TDVA+RG+D+ + + YD P + ++Y+HR+
Sbjct: 398 AIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRI 457
Query: 337 GRTARGMNSKGNA 299
GRT R +KG A
Sbjct: 458 GRTGRA-GAKGTA 469
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 58.4 bits (135), Expect = 9e-10
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = -2
Query: 499 SQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTAR 323
S+ +RK+ F L C+D+ ARG+D+ + ++ YDPP + Y+HR+GRTAR
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTAR 530
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 54.8 bits (126), Expect = 1e-08
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = -2
Query: 511 HGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGR 332
H + Q+ R +H F L C+D+ RG+DI +V+ ++ +D P + + Y+HR+GR
Sbjct: 312 HAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 371
Query: 331 TAR 323
+ R
Sbjct: 372 SGR 374
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.8 bits (111), Expect = 7e-07
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = -2
Query: 523 VSSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPP------TD 362
V+ + G A+R F + L T+V ARG+D+ V+ +V YD P D
Sbjct: 379 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPD 438
Query: 361 PKEYIHRVGRTAR 323
P+ Y+HR+GRT R
Sbjct: 439 PQTYLHRIGRTGR 451
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = -2
Query: 421 ARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTARGMNSKGNAVILLRP 281
ARGLD +V ++ +D P++ K YIHR+GRTAR G A+ + P
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARA-GKPGTAMSFVVP 432
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = -2
Query: 499 SQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTARG 320
SQ + E F + + L T + GLDI VD I+ YD P + R+GRT G
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRT--G 534
Query: 319 MNSKGNAVILL 287
KG +LL
Sbjct: 535 RKRKGYIYMLL 545
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = -2
Query: 499 SQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTARG 320
+Q ++KE F L T + GLDI D I+ YD + P I R+GRT R
Sbjct: 516 NQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRK 575
Query: 319 MNSK 308
+ K
Sbjct: 576 KSGK 579
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = -2
Query: 490 KRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRVGRTARGMNS 311
++K+ H F + L T VA G+D+PS + +++++ +Y+ GR AR M S
Sbjct: 411 RQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR-ARAMAS 469
Query: 310 K 308
K
Sbjct: 470 K 470
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = -2
Query: 517 SIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAARGLDIPSVDWIVQYDPPTDPKEYIHRV 338
++ G + ++R+ F + + L V G DIP++D ++ P + P +
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMI 353
Query: 337 GRTARGMNSKGNAVIL 290
GR R K + +IL
Sbjct: 354 GRGLRLHEGKRDCLIL 369
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 30.3 bits (65), Expect = 0.27
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 520 SSIHGRQSQAKRKEAYHGFVEAQNGALFCTDVAA--RGLDIPSVDWIVQYDPPTDPKEYI 347
S+I S + A + F + + + T+ A R D V +V Y PPT+P+ Y+
Sbjct: 536 SAISEYSSVSDMTRARNLFYQGRTNIMLYTERAHHFRRFDFRGVKAVVMYGPPTNPQFYV 595
Query: 346 HRVGRTARGMNSKGN 302
V R + S+GN
Sbjct: 596 ELVRMPMRTI-SEGN 609
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 333 RPTLCMYSLGSVGGSYWTIQSTLGMSSPLAATSVQNNAPFCASTK 467
R + Y LGS S G+S+P+ A S++ N F A K
Sbjct: 358 RDSSSFYGLGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEK 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,572
Number of Sequences: 5004
Number of extensions: 55690
Number of successful extensions: 179
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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