Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I05
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   184   9e-48
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   183   3e-47
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.41 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.96 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  184 bits (449), Expect = 9e-48
 Identities = 93/164 (56%), Positives = 107/164 (65%)
 Frame = -2

Query: 757 RPTRPDKARRXGYRAKQXXXXXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQS 578
           RP+RPDKARR GY+AKQ                    G TYGKP   GVN LK  R+ + 
Sbjct: 41  RPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARC 100

Query: 577 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHRE 398
            AEE           L+SYWV QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE
Sbjct: 101 TAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRE 160

Query: 397 MRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 266
            RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 161 SRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  183 bits (445), Expect = 3e-47
 Identities = 92/164 (56%), Positives = 107/164 (65%)
 Frame = -2

Query: 757 RPTRPDKARRXGYRAKQXXXXXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQS 578
           RP+RPDKARR GY+AKQ                    G TYGKP   GVN LK  R+ + 
Sbjct: 41  RPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARC 100

Query: 577 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHRE 398
            AEE           L+SYWV QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE
Sbjct: 101 TAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRE 160

Query: 397 MRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 266
            RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 161 SRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +2

Query: 209 SNSWLKPISTGMTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRSQ 388
           S+S   P+S+         SF T L S +S+ S  + ASL    S +L  +S A+ + S 
Sbjct: 59  SSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSS 118

Query: 389 TTH 397
           ++H
Sbjct: 119 SSH 121


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 516 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 403
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 511  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 407
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 261 HLSKTVIPVEIGFSQLFEKFYHWLMSISPKGSLQLGSTSVIAE 133
           H+S   I +    S L  +FY WLM +S    L +  +S+  +
Sbjct: 274 HMSVASIVLRNDLS-LNRRFYAWLMGLSKDTELSISDSSITVD 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,102
Number of Sequences: 5004
Number of extensions: 59873
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)