Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I05
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   189   2e-48
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   1.6  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   1.6  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    29   3.6  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    28   6.3  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  189 bits (460), Expect = 2e-48
 Identities = 90/165 (54%), Positives = 109/165 (66%)
 Frame = -2

Query: 760 PRPTRPDKARRXGYRAKQXXXXXXXXXXXXXXXXXXXXGATYGKPKSHGVNQLKPTRNLQ 581
           PRPTRP+KARR GYRAKQ                    G TYGKPK+HGVN+LK  ++ Q
Sbjct: 40  PRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQ 99

Query: 580 SIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHR 401
           ++AE            L+SYWVA+DS+YK++EV+L+DP HKAIRR+P   WI   VHKHR
Sbjct: 100 AVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHR 159

Query: 400 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 266
           E RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT    RKR
Sbjct: 160 EQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 508 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 392
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 508 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 392
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +1

Query: 517 PSKSSTHGDHRNDGQHAPQQWIEGCAWASTG*HHGSWACHKWHPXQLDACGHHVAHG 687
           P+    HG+H +   H         A A  G HHG    H  H     +  HH  HG
Sbjct: 452 PAHHGHHGEHHHAPAHHGHHGEHHHAPAHHG-HHGEHGTHHGHHGSHHSPAHHGHHG 507



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +1

Query: 517 PSKSSTHGDHRNDGQHAPQQWIEGCAWASTG*HHGSWACHKWHPXQLDACGHHVAH 684
           P+    HG+H +   H       G      G HH + A H  H       GHH +H
Sbjct: 500 PAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 578  GLKVARGLQLVDTMALGLAISGTLXNWTLAATTSHTDSEYNITLFS 715
            GLKVAR   LVD   +G+ + G +   T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -1

Query: 692 QNPCATWWPQASSX*GCHLWQAQEPWCQPVEAHAQPSIHC*GACWPSLRWS 540
           QNPCA    Q S    C   Q  +P  Q     AQP   C  AC P+ + S
Sbjct: 275 QNPCACQQAQPS----CDCAQQAQPTFQVQVQQAQPINQCVPACQPACQSS 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,511
Number of Sequences: 27780
Number of extensions: 347303
Number of successful extensions: 785
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)