Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_I05
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.1  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   9.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 83  RLPTREIKKESTKGRIIAP 27
           RLP RE++  +T   ++AP
Sbjct: 388 RLPCREVEAAATARNVVAP 406


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 90  VCSSAYKRNKKRVHKGADHCTSG 22
           VC   Y RNKK+V      C  G
Sbjct: 72  VCRLGYLRNKKKVCVPRSKCLPG 94


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 80  DEHTAHLMGSDYRRRPWTSAMTEVEPSCRLP 172
           +E+  +L   + RR PW     E    CR P
Sbjct: 409 EEYFLNLTVENNRRNPWFVEFWEHHFQCRYP 439


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 80  DEHTAHLMGSDYRRRPWTSAMTEVEPSCRL 169
           D++ A L     RR PW S   E    C L
Sbjct: 264 DDYMASLTPDTNRRNPWFSEYWEEVFDCLL 293


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 80  DEHTAHLMGSDYRRRPWTSAMTEVEPSCRL 169
           D++ A L     RR PW S   E    C L
Sbjct: 354 DDYMASLTPDTNRRNPWFSEYWEEVFDCLL 383


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 388 LTSAGRSSRGLGKG 347
           +T  G+  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 421 NAVHKHREMRGLTSAGRSSRGLGKGHR 341
           N+  K+RE     S  R  RG  + HR
Sbjct: 287 NSYRKYRETSKERSRDRRERGRSREHR 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,853
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)