Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I04
(522 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF020589-1|AAC98895.1| 86|Homo sapiens cytochrome C oxidase su... 101 1e-21
X15341-1|CAA33392.1| 86|Homo sapiens protein ( Human COX VIa-L... 100 6e-21
U83702-1|AAD00554.1| 86|Homo sapiens cytochrome c oxidase subu... 100 6e-21
BC107861-1|AAI07862.1| 109|Homo sapiens cytochrome c oxidase su... 100 6e-21
BC070186-1|AAH70186.1| 109|Homo sapiens cytochrome c oxidase su... 100 6e-21
BC007723-1|AAH07723.1| 109|Homo sapiens cytochrome c oxidase su... 100 6e-21
AL160264-2|CAI20472.1| 109|Homo sapiens protein ( Human DNA seq... 100 6e-21
AL021546-1|CAA16494.1| 109|Homo sapiens cytochrome c oxidase su... 100 6e-21
M83308-1|AAA52062.1| 97|Homo sapiens cytochrome c oxidase subu... 84 2e-16
U66875-1|AAC51328.1| 97|Homo sapiens cytochrome oxidase subuni... 82 1e-15
BC029818-1|AAH29818.1| 97|Homo sapiens cytochrome c oxidase su... 82 1e-15
>AF020589-1|AAC98895.1| 86|Homo sapiens cytochrome C oxidase
subunit VIa homolog protein.
Length = 86
Score = 101 bits (243), Expect = 1e-21
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK +++ VA P + + M N + + E HERPPFV ++RIRTK FPWGDG +L HN
Sbjct: 14 MWKALTYFVALPGVGVSMLNVFLKSRHEEHERPPFVAYPHLRIRTKPFPWGDGNHTLFHN 73
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 74 PHVNPLPTGYEDE 86
>X15341-1|CAA33392.1| 86|Homo sapiens protein ( Human COX VIa-L
mRNA for cytochrome c oxidase liver-specific subunitVIa
(EC 1.9.3.1). ).
Length = 86
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 14 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 73
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 74 PHVNPLPTGYEDE 86
>U83702-1|AAD00554.1| 86|Homo sapiens cytochrome c oxidase subunit
VIa protein.
Length = 86
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 14 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 73
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 74 PHVNPLPTGYEDE 86
>BC107861-1|AAI07862.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>BC070186-1|AAH70186.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>BC007723-1|AAH07723.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>AL160264-2|CAI20472.1| 109|Homo sapiens protein ( Human DNA
sequence from clone RP3-405J24 on chromosome 6 Contains
the FDG2 gene for FGD1 family member 2, the gene for a
novel protein ).
Length = 109
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>AL021546-1|CAA16494.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 99.5 bits (237), Expect = 6e-21
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -3
Query: 397 LWKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHN 218
+WK ++F VA P +A+ M N Y HERP F+ ++RIRTK FPWGDG +L HN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 217 PHVNALPSGYEDD 179
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>M83308-1|AAA52062.1| 97|Homo sapiens cytochrome c oxidase subunit
VIa protein.
Length = 97
Score = 84.2 bits (199), Expect = 2e-16
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -3
Query: 394 WKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHNP 215
W+ ++F +A P++AL N+Y H ERP F P +++RIRTK +PWGDG +L HN
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRERPEFRPYQHLRIRTKPYPWGDGNHTLFHNS 85
Query: 214 HVNALPSGYE 185
HVN LP+GYE
Sbjct: 86 HVNPLPTGYE 95
>U66875-1|AAC51328.1| 97|Homo sapiens cytochrome oxidase subunit
VIa heart isoform precursor protein.
Length = 97
Score = 81.8 bits (193), Expect = 1e-15
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = -3
Query: 394 WKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHNP 215
W+ ++F +A P++AL N+Y H RP F P +++RIRTK +PWGDG +L HN
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNS 85
Query: 214 HVNALPSGYE 185
HVN LP+GYE
Sbjct: 86 HVNPLPTGYE 95
>BC029818-1|AAH29818.1| 97|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 2 protein.
Length = 97
Score = 81.8 bits (193), Expect = 1e-15
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = -3
Query: 394 WKRMSFXVAFPAIALGMXNAYXAHQEEHHERPPFVPXEYMRIRTKRFPWGDGQKSLXHNP 215
W+ ++F +A P++AL N+Y H RP F P +++RIRTK +PWGDG +L HN
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNS 85
Query: 214 HVNALPSGYE 185
HVN LP+GYE
Sbjct: 86 HVNPLPTGYE 95
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,156,215
Number of Sequences: 237096
Number of extensions: 913418
Number of successful extensions: 1284
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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