Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I01
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 114 1e-26
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 77 2e-15
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 48 1e-06
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 30 0.28
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.9
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 27 2.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.9
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.9
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 26 5.9
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 114 bits (274), Expect = 1e-26
Identities = 51/70 (72%), Positives = 57/70 (81%)
Frame = -1
Query: 527 MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 348
+P+NPKPFL L GK VLV+LKWG EYKG L S D YMNLQL N EELVDG TG+LGE+
Sbjct: 4 VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63
Query: 347 LIRCNNVLYV 318
LIRCNNVL+V
Sbjct: 64 LIRCNNVLWV 73
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 77.4 bits (182), Expect = 2e-15
Identities = 38/74 (51%), Positives = 46/74 (62%)
Frame = -1
Query: 527 MPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEV 348
M +P FLN + GK VL++L G +YKG+L DGYMNL L TEE V+G T G+
Sbjct: 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60
Query: 347 LIRCNNVLYVRGAD 306
IR NNVLYV D
Sbjct: 61 FIRGNNVLYVSALD 74
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANT-EELVDGTCTGNLGEVLIR 339
P LN+ G+ +LV+LK G + G L + D YMNL L + DG L E IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 338 CNNVLYVRGAD 306
NN+ Y+R D
Sbjct: 63 GNNIKYLRIQD 73
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 497 SLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEE 387
SL S+ V K G + G L++ DG+MNL L++ +E
Sbjct: 8 SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 479 VLVKLKWGHEYKGLLVSTDGYMNLQLANTEELV 381
V VKL+ E G L + D ++N+ L + EE+V
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIV 54
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 548 VLKMYRLRFEFDANFNSFKFPIVS 619
++KMY L FEF+ NFN+ F ++S
Sbjct: 628 IIKMY-LDFEFNENFNATTFGLLS 650
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 621 VLNTYWPSFYTRAAFRAEVTLPYRP 695
V NTYW S+ + A+ +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 639 ASTYLIRLTIGNLNELKLASNS-KRSRYILRTCKNGGCYANK 517
+S L + + GN N L S++ K S ++L +NGG YA K
Sbjct: 968 SSKLLKQESSGNKNSTSLESDAFKESSFVLNE-ENGGIYAGK 1008
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = -1
Query: 458 GHEYKGLLVSTDGYMNLQLANTEELV----DGTCTG---NLGEVLIRCNNVLYVRGAD 306
G + G+L D MNL L + EE + DG TG LG V++R ++ + D
Sbjct: 43 GRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,099
Number of Sequences: 5004
Number of extensions: 42527
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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