Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_I01
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 131 3e-30
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 131 3e-30
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 131 3e-30
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 131 3e-30
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 131 3e-30
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 131 3e-30
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 69 2e-11
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 69 2e-11
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 69 2e-11
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 69 2e-11
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 38 0.034
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 38 0.034
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 38 0.034
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 38 0.034
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 38 0.034
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 38 0.034
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 38 0.034
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 38 0.034
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 38 0.034
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.14
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.14
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.14
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 36 0.14
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 36 0.14
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 36 0.14
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 36 0.14
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 36 0.14
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 36 0.18
BC110609-1|AAI10610.1| 1301|Homo sapiens EFCAB5 protein protein. 33 0.97
BC110608-1|AAI10609.1| 1301|Homo sapiens EFCAB5 protein protein. 33 0.97
AK128126-1|BAC87284.1| 1149|Homo sapiens protein ( Homo sapiens ... 33 0.97
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 131 bits (316), Expect = 3e-30
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -1
Query: 530 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 351
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 350 VLIRCNNVLYVRGAD 306
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 131 bits (316), Expect = 3e-30
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -1
Query: 530 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 351
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 350 VLIRCNNVLYVRGAD 306
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 131 bits (316), Expect = 3e-30
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -1
Query: 530 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 351
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 350 VLIRCNNVLYVRGAD 306
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 131 bits (316), Expect = 3e-30
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -1
Query: 530 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 351
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 350 VLIRCNNVLYVRGAD 306
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 131 bits (316), Expect = 3e-30
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -1
Query: 530 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 351
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 350 VLIRCNNVLYVRGAD 306
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 131 bits (316), Expect = 3e-30
Identities = 56/75 (74%), Positives = 66/75 (88%)
Frame = -1
Query: 530 AMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGE 351
++P+NPKPFLN LTGK V+VKLKWG EYKG LVS DGYMN+QLANTEE +DG +G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 350 VLIRCNNVLYVRGAD 306
VLIRCNNVLY+RG +
Sbjct: 62 VLIRCNNVLYIRGVE 76
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 336
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 335 NNVLYV 318
NNVLY+
Sbjct: 68 NNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 336
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 335 NNVLYV 318
NNVLY+
Sbjct: 68 NNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 336
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 335 NNVLYV 318
NNVLY+
Sbjct: 68 NNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 68.9 bits (161), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRC 336
P FL + G+ V+VKL G +Y+G+L DGYMN+ L TEE V+G G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 335 NNVLYV 318
NNVLY+
Sbjct: 68 NNVLYI 73
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 37.9 bits (84), Expect = 0.034
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 509 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 330
P L K + +KL G +G+L D +MNL + E+ N+G V+IR N+
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNS 66
Query: 329 VLYVRGAD 306
++ + +
Sbjct: 67 IIMLEALE 74
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 35.9 bits (79), Expect = 0.14
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 515 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 339
P L + +LV+LK G Y G LVS D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 338 CNNVLYVRGAD 306
+ + Y+R D
Sbjct: 63 GSTIKYLRIPD 73
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 35.5 bits (78), Expect = 0.18
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -1
Query: 485 KSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYVRGAD 306
K + +KL G +G+L D +MNL + E+ N+G V+IR N+++ + +
Sbjct: 3 KKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALE 62
>BC110609-1|AAI10610.1| 1301|Homo sapiens EFCAB5 protein protein.
Length = 1301
Score = 33.1 bits (72), Expect = 0.97
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 646 NDGQYVFNTTHYREFK*IEISVELEAKPIHFENLQ 542
+D Q+V N YR+ K I +V E KPIH +Q
Sbjct: 846 DDAQFVLNRVLYRDMKGISFTVVDEGKPIHVPQVQ 880
>BC110608-1|AAI10609.1| 1301|Homo sapiens EFCAB5 protein protein.
Length = 1301
Score = 33.1 bits (72), Expect = 0.97
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 646 NDGQYVFNTTHYREFK*IEISVELEAKPIHFENLQ 542
+D Q+V N YR+ K I +V E KPIH +Q
Sbjct: 846 DDAQFVLNRVLYRDMKGISFTVVDEGKPIHVPQVQ 880
>AK128126-1|BAC87284.1| 1149|Homo sapiens protein ( Homo sapiens
cDNA FLJ46247 fis, clone TESTI4021129. ).
Length = 1149
Score = 33.1 bits (72), Expect = 0.97
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 646 NDGQYVFNTTHYREFK*IEISVELEAKPIHFENLQ 542
+D Q+V N YR+ K I +V E KPIH +Q
Sbjct: 694 DDAQFVLNRVLYRDMKGISFTVVDEGKPIHVPQVQ 728
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,292,532
Number of Sequences: 237096
Number of extensions: 1357874
Number of successful extensions: 2255
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2255
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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