Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_H24
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    27   2.3  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    25   7.1  

>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 492 AVPTAYKIGLTFTLSITLRNSQ*AHETRDSRAIANETNSGED 617
           + P+   +GL   LSI+LR  + A ET     +A   N G+D
Sbjct: 18  SAPSEKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKD 59


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 116 ISNKSRDDQKNETTTIKYESEYEKSYKVKF 205
           ISN+  ++Q+NE    K+E+   + +K+ F
Sbjct: 26  ISNEPSEEQRNEHVLKKWENNVLRHWKILF 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,968
Number of Sequences: 5004
Number of extensions: 37269
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)