Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H10
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical pr... 111 5e-25
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 31 0.84
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z75547-8|CAA99898.1| 126|Caenorhabditis elegans Hypothetical pr... 29 3.4
U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel ... 29 3.4
AF106583-1|AAM15569.1| 183|Caenorhabditis elegans Hypothetical ... 29 4.5
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical... 28 7.9
AC025724-4|AAP31423.1| 612|Caenorhabditis elegans Hypothetical ... 28 7.9
AC025724-3|AAG23379.2| 662|Caenorhabditis elegans Hypothetical ... 28 7.9
>U23170-1|AAC46699.1| 163|Caenorhabditis elegans Hypothetical
protein F58F12.1 protein.
Length = 163
Score = 111 bits (267), Expect = 5e-25
Identities = 52/103 (50%), Positives = 72/103 (69%)
Frame = -1
Query: 471 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQN 292
+E+ LTFA+ + + VVKQ+DVP+ +G G+L HVPT+ VL+PGVV++ N+G
Sbjct: 29 EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQ 88
Query: 291 KIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQ 163
++FVSSGT++VN D S QVLAEE +E ID SAA+ L AQ
Sbjct: 89 RLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQ 131
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 483 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 388
A KGD++ + A GN+V K++V++++ P F
Sbjct: 49 ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 483 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 388
A KGD++ + A GN+V K++V++++ P F
Sbjct: 49 ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80
>Z75547-8|CAA99898.1| 126|Caenorhabditis elegans Hypothetical
protein R11D1.8 protein.
Length = 126
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = -1
Query: 444 GNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 265
G + +K +K+++ P +SG + KH ++ GVV +N+ + V++ T+
Sbjct: 24 GKRFSTEKFNLKKVNSPKYSG---LANKHAIDVSAAAKGVVVSTKNEKGRPAKAVTTSTL 80
Query: 264 TVNDDSSVQVLAEEA 220
+ +SV+ LA+ A
Sbjct: 81 SKTPVASVRRLAKNA 95
>U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform b protein.
Length = 303
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 274 RRYEDFILFPIIFKNCNNTRSKNSQ 348
RR++ + P+++ N NN SKN++
Sbjct: 274 RRFDVTVFLPVVYNNVNNYNSKNAE 298
>AF106583-1|AAM15569.1| 183|Caenorhabditis elegans Hypothetical
protein F23C8.13 protein.
Length = 183
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 596 IYFRQFSFRFLNS-FKFPIVSRIKYVL 673
IY QFS F+N+ F+F IVSR Y L
Sbjct: 156 IYLHQFSHGFVNNAFRFLIVSRSSYSL 182
>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
protein ZK430.1 protein.
Length = 1650
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 285 FVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQS 160
F S + S+++++EEA + I +A+++A AQS
Sbjct: 459 FASEAVAATQSEESIEIISEEAPSSKKIKLTASEKAQKLAQS 500
>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
protein Y47D3A.29 protein.
Length = 1428
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -1
Query: 429 YDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNK 289
Y K +Q+ VP + G+LP+ + L R V ++++++ + K
Sbjct: 859 YSKDSDEQLSVPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAK 905
>AC025724-4|AAP31423.1| 612|Caenorhabditis elegans Hypothetical
protein Y67D8C.3b protein.
Length = 612
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 441 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 548
YP RR PF H EH +S V +E F L +G+P+
Sbjct: 57 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 95
>AC025724-3|AAG23379.2| 662|Caenorhabditis elegans Hypothetical
protein Y67D8C.3a protein.
Length = 662
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 441 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 548
YP RR PF H EH +S V +E F L +G+P+
Sbjct: 107 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,005
Number of Sequences: 27780
Number of extensions: 272491
Number of successful extensions: 569
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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