Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_H09
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.57 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.4  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   7.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   7.1  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   9.4  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   9.4  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -1

Query: 565  YYVPLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 428
            Y   ++++VP P  +PE   K + +  E  +  V++  E+DG++L+
Sbjct: 1139 YLFEIIDVVPQPG-RPETRHKLKLVTREEIKGTVAVVCEVDGYLLS 1183


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 499  WFS*QLQA*SRVLGQFQQGVRNKVDSPDEKQ 591
            W+S +  A S VL QF++  R  + S  EK+
Sbjct: 1553 WYSVESNATSHVLQQFEEACRKALSSSAEKR 1583


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 292 HLNAEGMQSYIDRYGETIYRVSNEMGPAPRMTTNKSRNSVCEQLEKLVPI 143
           H   +  Q+Y+    E + R+ NE+    R+ T+     V ++ E  V I
Sbjct: 123 HRQLQTAQNYLTEMKEALGRIKNELSTNERLDTSAREALVKQESELTVKI 172


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
 Frame = +1

Query: 142 QSVLTSPIVRTPSFCFYLSSYAEPVPFH----C*H---DKLSLRIYQYN-FACLQHSNGL 297
           +++   PI+R  +F  +++SY   +P H    C H   D+L++    ++   C+   +  
Sbjct: 687 RNIAIPPILRLVAFGLFITSYI--IPSHHIRSCKHYFLDRLAILFLTFSPTMCMLSISFE 744

Query: 298 FLEHPKMHISFQV---LPT*LYQYP--LHQQLCRQRDAKLHQGL 414
            L +  + I+  +   L T L +Y   LH +  R++DAK H  L
Sbjct: 745 ALFYVVLFITLGLWMELETELQKYTEQLHPEYSRKKDAKFHLSL 788


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 50  TLWSXLFISFLSACQXH*TKIAPITTIL 133
           TL S L    +S C+ +   +APITTIL
Sbjct: 141 TLLSLLNDEEISCCEYYCYSVAPITTIL 168


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 751 VFVQECVPENLDLKKKVFQNLDSVVDDNT 665
           V  + C   NLD+ K    NLDS++ D +
Sbjct: 219 VINKHCTSWNLDMSKSNSLNLDSIIVDTS 247


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/28 (28%), Positives = 21/28 (75%)
 Frame = -1

Query: 745  VQECVPENLDLKKKVFQNLDSVVDDNTI 662
            ++  +P  + L KK+F+N ++VV+++++
Sbjct: 1294 IRASLPTLICLSKKIFENAENVVENHSL 1321


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  VLKLRGHAIHITTLWSXLFISFLSACQXH*TKIAPITTIL 133
           +++L  H  ++T     ++ SFLS    H  ++  +TT+L
Sbjct: 666 LIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVL 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,743
Number of Sequences: 5004
Number of extensions: 67933
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)