Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_H08
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    29   0.52 
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    29   0.69 
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   8.5  

>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 149 NPHVAIPXPFHTSVRNYNNSFNLSTS 226
           NP V IP P  T   N N SFN+S+S
Sbjct: 366 NPTVNIPQPAQTVPSNDNGSFNVSSS 391


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
 Frame = +3

Query: 264 LCGFTRFIFD---ETCRIFPKHNSCLPVIHTLPVDL*INWYRKP------RIRKHIIFHC 416
           LC FT   FD   ET RIFP +   LP   TLPV   +++ R         IR       
Sbjct: 225 LCQFTP-CFDSAKETDRIFPLYIKYLPPCVTLPVPSLLSFARSVLLTVSFEIRIRFSAEP 283

Query: 417 SIPGALQVLTRNIQIRSVCSVIE*QRIAKLGNINKIIWL 533
            IP     +T + Q   V S +   R+ KLG  +K+ +L
Sbjct: 284 LIPRNCTDVTESAQ--EVLSKLGRSRVVKLGKSDKLSYL 320


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 419 ATMKNNVLSDSWFSI-PIDLQIDW 351
           AT   N+ SDS F+  P D  +DW
Sbjct: 281 ATQMKNITSDSSFTFCPTDKDVDW 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,145
Number of Sequences: 5004
Number of extensions: 52582
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)