Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H06
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760 103 1e-22
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386... 85 7e-17
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 33 0.28
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 31 1.1
03_04_0184 - 18210875-18212065 29 2.6
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 6.1
04_04_1582 - 34590698-34591199,34593849-34594690 28 6.1
11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541... 28 8.1
10_08_0223 - 15986763-15987575 28 8.1
>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
Length = 112
Score = 103 bits (248), Expect = 1e-22
Identities = 42/71 (59%), Positives = 54/71 (76%)
Frame = -3
Query: 682 GKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLF 503
G+KIF +CAQCHTV+ G HK GPNL+G FGR++G G+SYS ANK + W ++TL+
Sbjct: 15 GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLY 74
Query: 502 EYLENPKKYIP 470
+YL NPKKYIP
Sbjct: 75 DYLLNPKKYIP 85
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = -1
Query: 486 PRNTSPGTKMVFAGLKKANERADLIAYLKSAT 391
P+ PGTKMVF GLKK ERADLI+YLK AT
Sbjct: 80 PKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111
>01_06_1583 +
38436958-38437069,38438167-38438300,38438542-38438608,
38438900-38438937,38439302-38439391
Length = 146
Score = 84.6 bits (200), Expect = 7e-17
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = -3
Query: 691 AXNGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDD 512
A G+KIF +CA CH V+ HK GPNL+G FGR++G A GFSY +K + W ++
Sbjct: 12 AAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVIWEEN 71
Query: 511 TLFEYLENPKKY 476
TL++YL PKK+
Sbjct: 72 TLYDYLLTPKKH 83
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = -1
Query: 513 TLSLNILRIPRNTSPGTKMVFAGLKKANERADLIAYLKSAT 391
TL I I +P KM F GLK+ +RADLIAYLK+AT
Sbjct: 106 TLGSVIPGITHKYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 585 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSPGTKMVFAGLKKANERA 421
+ L RLQDS TP P+K + L+ N+ P TS T ++ A K + A
Sbjct: 304 KNLERLQDSITPKPVKPPSTPNTVALAANMAPDPVTTSVTTSVIPAAQTKKKKSA 358
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -1
Query: 180 NVLCDVIYTLLTML*VIKC*IINRSCKFCDSLFTKKLSLAINFINLF*VLQCYQLKLLNC 1
N++ + +Y + +I +IN C T+ L+L + F+ L L C+ L L C
Sbjct: 423 NMMSENLYPAFAVY-IIPTVVINHQCSLVHFATTRMLNLVLPFLFLVYDLDCFDLSKLEC 481
>03_04_0184 - 18210875-18212065
Length = 396
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 285 AEYITDHTDWAK*EVNSRNVMENASYGIFYYFKITW*QI*DR 410
A+ I +H WA E ++N N S G Y +K+ W + D+
Sbjct: 258 ADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQ 299
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 606 FG-PTLCLPPASTVWHWA 656
FG PTLCLPP +T W A
Sbjct: 21 FGMPTLCLPPIATYWSHA 38
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 634 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKY 476
AGG K G G G G+ S+ + KGI W +D +L +KY
Sbjct: 238 AGGGKKGGGGGGGGGGGGHGEKGSAKSSEQERRKGIAWTEDEHRLFLLGLEKY 290
>11_03_0190 -
11350497-11350832,11351926-11352303,11353897-11354181,
11354515-11355327
Length = 603
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 523 WNDDTLFEYLENPKKYIPWNQDG 455
WND+ + L N KK IP +DG
Sbjct: 277 WNDEDCVKILANCKKAIPTREDG 299
>10_08_0223 - 15986763-15987575
Length = 270
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 631 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 518
GG G +G +G +G AG Y ++ G TWN
Sbjct: 40 GGGGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWN 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,517
Number of Sequences: 37544
Number of extensions: 357137
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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