Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_H06
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical ...    98   6e-21
Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical pr...    97   1e-20
CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z71267-5|CAJ80828.1|  266|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z66519-13|CAI46547.1|  281|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z66519-12|CAA91376.2|  288|Caenorhabditis elegans Hypothetical p...    27   9.6  
U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulat...    27   9.6  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF038611-8|AAB92035.1|  111|Caenorhabditis elegans Hypothetical
           protein E04A4.7 protein.
          Length = 111

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 42/71 (59%), Positives = 50/71 (70%)
 Frame = -3

Query: 682 GKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLF 503
           GKK++ QRC QCH V++    K GP LHG  GR +G  +GF YS ANK KG+ W  +TLF
Sbjct: 12  GKKVYKQRCLQCHVVDSTAT-KTGPTLHGVIGRTSGTVSGFDYSAANKNKGVVWTRETLF 70

Query: 502 EYLENPKKYIP 470
           EYL NPKKYIP
Sbjct: 71  EYLLNPKKYIP 81



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 21/29 (72%), Positives = 25/29 (86%)
 Frame = -1

Query: 486 PRNTSPGTKMVFAGLKKANERADLIAYLK 400
           P+   PGTKMVFAGLKKA+ERADLI Y++
Sbjct: 76  PKKYIPGTKMVFAGLKKADERADLIKYIE 104


>Z74046-2|CAA98555.1|  123|Caenorhabditis elegans Hypothetical
           protein ZC116.2 protein.
          Length = 123

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 43/71 (60%), Positives = 52/71 (73%)
 Frame = -3

Query: 682 GKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLF 503
           GKKIF QRC QCH V +  + K GP L+G  GR++GQ AGF YS ANK KG+ W+  TLF
Sbjct: 22  GKKIFKQRCEQCHVVNSL-QTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGVVWDRQTLF 80

Query: 502 EYLENPKKYIP 470
           +YL +PKKYIP
Sbjct: 81  DYLADPKKYIP 91



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = -1

Query: 486 PRNTSPGTKMVFAGLKKANERADLIAYLK 400
           P+   PGTKMVFAGLKKA+ERADLI +++
Sbjct: 86  PKKYIPGTKMVFAGLKKADERADLIKFIE 114


>CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical
           protein K09E10.1 protein.
          Length = 692

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 461 RWCLLDSRRQMSVLTL-LPISNLLPSNFKVIENSIRSI-FHNISG 333
           +WCL  S    ++L   L ISN L SNF V +++I+ I F N  G
Sbjct: 369 KWCLNLSNINCALLIFFLFISNFLSSNFLVNKDAIQEIKFRNTPG 413


>Z71267-5|CAJ80828.1|  266|Caenorhabditis elegans Hypothetical
           protein W01A8.7 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 444 VQQTPSWFQGMYFLGFSRYSKRVSSF-HVMPLALLASEYENPAAW 575
           + +T  WFQG+  L +SR  K+   + H+  +     E EN   W
Sbjct: 206 LDRTFLWFQGLNGLDYSRAKKKAGHYQHLKKILYKKWESENNGKW 250


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 425 VLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 321
           +L  LP  N      + ++N ++SI HNI   YFL
Sbjct: 10  LLLFLPQENRYFVELRSLKNLLKSILHNIENDYFL 44


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -3

Query: 592 FGRKTGQAAGFSYSDANK---AKGITWNDDTLFEYLEN--PKKY 476
           FG++ G A GF  +  NK    K    ND  L  +L N   KKY
Sbjct: 569 FGKRNGNAYGFEMASINKLADVKNALRNDRNLLHFLVNFIEKKY 612


>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 627 PPASTVWHWAH 659
           PP +++WHWAH
Sbjct: 310 PPMASLWHWAH 320


>Z66519-13|CAI46547.1|  281|Caenorhabditis elegans Hypothetical
           protein B0334.2b protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 LTLLPISNLLPSNFKVIENSIRSIFHNISGI 330
           +T+  I++L+   F    + +RSI H+I+GI
Sbjct: 230 ITVSEITSLVAKEFHASPHQVRSILHDINGI 260


>Z66519-12|CAA91376.2|  288|Caenorhabditis elegans Hypothetical
           protein B0334.2a protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 422 LTLLPISNLLPSNFKVIENSIRSIFHNISGI 330
           +T+  I++L+   F    + +RSI H+I+GI
Sbjct: 237 ITVSEITSLVAKEFHASPHQVRSILHDINGI 267


>U52070-1|AAD11527.1|   67|Caenorhabditis elegans dauer-upregulated
           gene protein.
          Length = 67

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 681 ERKFLYNDVPSATLLKLVANTK*DRIYMDS 592
           E+  + NDVPS  LL++V     DRI ++S
Sbjct: 21  EQMMVQNDVPSPPLLEVVRPRSRDRIMLES 50


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 574  QAAGFSYSDANKAKGITWNDD 512
            +  GFSY D N     TW+DD
Sbjct: 1763 RGVGFSYQDKNVNNDTTWDDD 1783


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,046
Number of Sequences: 27780
Number of extensions: 343096
Number of successful extensions: 934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)