Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H05
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 73 1e-14
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.40
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 1.2
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 26 1.6
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 2.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 4.9
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 8.6
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 73.3 bits (172), Expect = 1e-14
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = -2
Query: 316 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 143
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 142 XXXXXXKIVLRLEC 101
K+VLRLEC
Sbjct: 61 KAKVTKKVVLRLEC 74
Score = 45.2 bits (102), Expect = 3e-06
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -3
Query: 156 PSSKRRQKPLRKLCSVLSVLIXKVRSQVALKRCKHFELGGDKKRK 22
P ++ K +K+ L + K ++Q+ LKRCKHFELGG+KK K
Sbjct: 56 PVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTK 100
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.40
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 207 PWAACLSLDFLYCDTLCTLWHL 272
P A + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 1.2
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 279 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSV 100
K +A K R H+ + + V ++ V SPNP S +R+K R+ S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSSS 299
Query: 99 LIXKVRSQVA 70
+ ++VA
Sbjct: 300 ITTPPTAKVA 309
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 26.2 bits (55), Expect = 1.6
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 126 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 305
L+VF FF+ G LR R+L S+ F + L TL+H + + + C G
Sbjct: 40 LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92
Query: 306 TFTIFE 323
F +F+
Sbjct: 93 FFNLFK 98
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/65 (24%), Positives = 23/65 (35%)
Frame = +1
Query: 88 LXNQHTQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCG 267
+ NQ D W L W WT + ++Y + + R F VLCG
Sbjct: 1210 ILNQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCG 1266
Query: 268 IYIFC 282
+ C
Sbjct: 1267 TIVSC 1271
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 243 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 157
ST+ PR T E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 29 FLSPPSSKCLHLFNATCDLTLXISTLKTEHNFLSG 133
F++ ++CL F A C L I L++ H G
Sbjct: 618 FIAVTDAQCLEGFRALCHLEGIIPALESSHAVYGG 652
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 231 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 148
P+K + P+V +M +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 234 SPRKGTLPRVEDVMIVNSRVTVVSPNP 154
SP +G+LPR ++ + +++ NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,043
Number of Sequences: 5004
Number of extensions: 25083
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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