Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H04
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 177 1e-45
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 177 1e-45
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 34 0.027
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 33 0.048
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.8
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.8
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 4.1
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 4.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 5.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 7.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.6
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.6
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 9.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 9.6
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 9.6
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 177 bits (432), Expect = 1e-45
Identities = 84/165 (50%), Positives = 119/165 (72%)
Frame = -1
Query: 578 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 399
LADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +
Sbjct: 70 LADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTI 127
Query: 398 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 219
KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I ++E+V K
Sbjct: 128 KTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQK 187
Query: 218 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 84
LIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 188 LIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
Score = 75.8 bits (178), Expect = 7e-15
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = -3
Query: 729 IVDPFTRKDWYDVKAPXMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 580
+VDPF+RKDWYD+KAP F + VG TLVNRT G K A++ LKGR+ EVS
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVS 69
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 177 bits (432), Expect = 1e-45
Identities = 83/165 (50%), Positives = 122/165 (73%)
Frame = -1
Query: 578 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 399
LADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +
Sbjct: 70 LADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTI 127
Query: 398 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 219
KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I ++ +RE+V K
Sbjct: 128 KTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQK 187
Query: 218 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 84
LIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 188 LIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = -3
Query: 729 IVDPFTRKDWYDVKAPXMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 580
+VDPF+RK+WYD+KAP F + VG TLVNRT G K A++ LKGR+ EVS
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVS 69
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 33.9 bits (74), Expect = 0.027
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 421 RVCHFLTIHLSLSVVRSMPWKLQSTLRPC-TYSAINLNLRKDLSASVSACRSARGNF 588
R+CHFL I + L V+ + S L C TYSA+ L + +S+ V+ CR +G F
Sbjct: 546 RLCHFLIITIGL-VMFCKCFSEMSPLFACSTYSALAFILLQVISSYVTNCREEQGAF 601
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 33.1 bits (72), Expect = 0.048
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 451 SLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFENSSLQSFRSN 621
+LS++ S KLQ +R + +A+NL D+ A+ + +S N +NS L ++ N
Sbjct: 446 ALSLLLSQDEKLQHDVRSASSAALNLPRDTDIKATPNLSQSGNINSDNSDLSNYPYN 502
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 92 PSTSRSRNGASSTLSPFGCKHRAE 163
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 272 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 141
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 521 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 390
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 426 LPFFNHPPELIGCEVHAVEVAEHITS 503
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -1
Query: 569 LQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIE-ANIDVKT 393
L+ DAE + + F I EY++ N D T K + +W ++ E +
Sbjct: 106 LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK---FINEWDSIFEPVKSEFNL 162
Query: 392 TDGYVLRVFCIGFTNKDSLSQRK 324
D + C+ ++ L+ K
Sbjct: 163 VDASLGLAKCLAIKDEQELANIK 185
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 366 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 274
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -1
Query: 449 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 312
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 359 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 231
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 159 ARCLHPKGESVEEAPFRDLEVD 94
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 470 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 372
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 17 RLVALRPFRLVSGFPLXLHRLRREVPSTSRSRNGASSTLSPFGCKHRA 160
R +++ P + +S P LH+ E S++ + SST PF K RA
Sbjct: 530 RSISIPPPKSIS--PSILHKPSLESASSTPKISSCSSTPKPFNSKLRA 575
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,891
Number of Sequences: 5004
Number of extensions: 67744
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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