Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H04
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 208 5e-54
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 205 3e-53
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 205 4e-53
04_01_0253 - 3358090-3359052 32 0.62
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928... 29 3.3
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 29 3.3
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.4
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 28 7.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 208 bits (507), Expect = 5e-54
Identities = 97/165 (58%), Positives = 130/165 (78%)
Frame = -1
Query: 578 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 399
LADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 398 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 219
KTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 128 KTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSK 187
Query: 218 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 84
IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 84.6 bits (200), Expect = 8e-17
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = -3
Query: 726 VDPFTRKDWYDVKAPXMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 580
VDPF +KDWYD+KAP +F+ R +G TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVS 69
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 205 bits (501), Expect = 3e-53
Identities = 96/165 (58%), Positives = 129/165 (78%)
Frame = -1
Query: 578 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 399
LADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 398 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 219
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSK 187
Query: 218 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 84
IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
Score = 85.0 bits (201), Expect = 6e-17
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = -3
Query: 726 VDPFTRKDWYDVKAPXMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 580
VDPF +KDWYD+KAP +F+ R VG TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVS 69
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 205 bits (500), Expect = 4e-53
Identities = 97/165 (58%), Positives = 128/165 (77%)
Frame = -1
Query: 578 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 399
LADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 398 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 219
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSK 187
Query: 218 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 84
IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 188 FIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
Score = 86.2 bits (204), Expect = 3e-17
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = -3
Query: 726 VDPFTRKDWYDVKAPXMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 580
VDPF++KDWYD+KAP +FS R +G TLV+RTQGTKIASEGLK RVFEVS
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVS 69
>04_01_0253 - 3358090-3359052
Length = 320
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 59 PLXLHRLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRC 193
PL R RR +TSR+ +G +T + G R GRP RC
Sbjct: 62 PLRCRRRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106
>11_06_0384 +
22990773-22990949,22991315-22991496,22992533-22992887,
22993124-22993426,22994077-22994313
Length = 417
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = +3
Query: 39 SDLSPASPLXSTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGVRNQ 218
SD+ ++ T F F + D+ +G + FHL D +A M + + + +
Sbjct: 195 SDICISTSAAPTYFPAHFFKTTDVSSGKSREFHLIDGGVAANNPTMVAM-----SMISKE 249
Query: 219 LVHHLPEFRVSDVACNDFTHFL 284
++ +F++ A D+ H+L
Sbjct: 250 VLRENQDFKLGKPA--DYKHYL 269
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 490 STLRPCTYSAINLNLRKDLSASVSACRSARGNFENSSLQSFRSNFRSLGTVDKRGADLPL 669
++LR +S + RK+ ++CRSAR + + LQS S+ + K AD+
Sbjct: 489 NSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKELKLFADMYK 548
Query: 670 AEHXRSLDIV 699
E S +I+
Sbjct: 549 RESTDSREIM 558
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 233 EVVNKLIPDSIAKDIEKACHGIYPLRD 153
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 436 LTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFENSS 600
LT+ LS++ + K+ +T+ + L +L+A CRSA + NSS
Sbjct: 389 LTLQAKLSIIHDLLGKVHATVVSTEKGQVYRALLDELNAERRQCRSAMRDLFNSS 443
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 490 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 401
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,351,220
Number of Sequences: 37544
Number of extensions: 485688
Number of successful extensions: 1410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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