Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_H04
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   191   6e-49
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z81562-4|CAB04556.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       28   9.0  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  191 bits (465), Expect = 6e-49
 Identities = 90/157 (57%), Positives = 117/157 (74%)
 Frame = -1

Query: 554 DAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 375
           ++E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY L
Sbjct: 74  NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTL 133

Query: 374 RVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAK 195
           RVF I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPDSI K
Sbjct: 134 RVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGK 193

Query: 194 DIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 84
           DIEK C  +YPL++V IRKVK++KRP+ ++ +L +LH
Sbjct: 194 DIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH 230



 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 42/51 (82%), Positives = 47/51 (92%)
 Frame = -3

Query: 726 VDPFTRKDWYDVKAPXMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSPG 574
           VDPF+RK+WYD+KAP MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVS G
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLG 70



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 61  GEAGDKSERPEGYEPPVXRE 2
           G  G+K +RP+ YEPPV +E
Sbjct: 237 GADGEKVDRPDDYEPPVQQE 256


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 95  STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 235
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>Z81562-4|CAB04556.1|  360|Caenorhabditis elegans Hypothetical
           protein K03D7.7 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +1

Query: 436 LTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFENSSLQSFR 615
           L  H+S   +  MP K+ +T+     +   +NLRK +S S+      +G+  NS    + 
Sbjct: 106 LKSHISKPSLSDMPIKILATISDYLETKDRMNLRK-VSRSLQDFVDYQGSGINSLEICYG 164

Query: 616 SNFRSLGTVDKRGADLPLAEH 678
            N  SL  V KR     L EH
Sbjct: 165 HNSVSLKIVKKRIEYRELEEH 185


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 430 HFLTIHLSLSVVRSMPWK-LQSTLRPCTYSAINLNLRKDLSASVSACRSARGNFEN 594
           H + +  +++V+ +  WK +  T+   T   ++LN   +   S+   +S +GNFEN
Sbjct: 466 HVIEVAPAIAVI-AYTWKNVMHTMEDLTAIGVHLNFEVNRLLSIPLEKSLQGNFEN 520


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 353 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 186
           T + S+S     + QH Q RA++K M E +   V N ++ E   VV K + D    +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 421  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 579
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 421  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 579
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKR 1174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,859
Number of Sequences: 27780
Number of extensions: 393795
Number of successful extensions: 1174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)