Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H03
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480 31 1.1
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 1.1
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 30 1.9
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 29 2.5
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 28 5.8
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 28 5.8
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 28 7.6
>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
Length = 910
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = -2
Query: 501 HSDFTKLRTMLISTHMQDLKDVTQDVHYENFRA-----QCISQISQHAMRERGKLKRDSM 337
H + TKLR + D +DV ++ YE R + + + H + + L+ + +
Sbjct: 70 HEESTKLRLKELKELAYDAEDVVEEYEYEVNRCKVEALELSASTADHKRKRQQNLENEDL 129
Query: 336 GNNNDVVITD----TDRLLLQKDEEIRRMQDMLT 247
N+ V + D R L+++ EI+ D T
Sbjct: 130 FNSGMVAVPDELAVKTRKLIERFHEIKYYSDNFT 163
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 327 NDVVITDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSI 199
N + T +LL +KD IR +++ L Q +L A +KK + +
Sbjct: 1389 NSAELERTKKLLSEKDSVIRNLEEKLAGCQSELDAREKKLNDV 1431
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -2
Query: 357 KLKRDSMGNNNDVVITDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDK 214
K K+DS G N + R LL D+E++ ++ + ++++ +K + K
Sbjct: 412 KSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRK 459
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 446 RSCMCVEINIVLSLVK--SECRGFSTSTIPHGYCLPRT-LLPPISRTISEAT 592
+SC ++ S K S C+ FS PH + LP + PP++RT+S+ T
Sbjct: 54 KSCRSTTVSRPTSPSKEVSRCQSFSADR-PHAHPLPIPGVRPPVTRTVSDIT 104
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -2
Query: 423 HYENFRAQCISQISQHAMRER----GKLKRD-SMGNNNDVVITDTDRLLLQKDEEIRRMQ 259
HY NF S+H E+ G K + S G+N D+ I T + +DE +
Sbjct: 568 HYNNFEGA--EDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLKHMDRDELVAHFN 625
Query: 258 DMLTQMQQK 232
M+ QM+++
Sbjct: 626 KMMNQMKRQ 634
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/98 (19%), Positives = 40/98 (40%)
Frame = -2
Query: 492 FTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVVI 313
F K+ + H L++ T+++ + + + + + R + + M VI
Sbjct: 624 FNKMMNQMKRQHDSTLQEKTEEIF--RLKRENLKKEGPNPWHLRNNKEFELMRKKIWEVI 681
Query: 312 TDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSI 199
T D +L++ IR D+ Q K+K D + +
Sbjct: 682 TKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQL 719
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = -2
Query: 504 RHSDFTKLRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNN 325
+ SD + R + H + + + + + RA + ++ + R +L + +GN
Sbjct: 207 KSSDELETRNSNVEFHSETVGTLPESKQGHDSRATKLLNSGEYQVILRKELTKSDVGNVG 266
Query: 324 DVVITDTDRL-----LLQKDEEIRRMQDMLTQMQQKLK 226
+V+ D LLQ+D I M DM+ + K K
Sbjct: 267 RIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFK 304
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 297 LLLQKDEEIRRMQDMLTQMQQKLKASDKKH 208
L+L +EIR++ D L +++ L+ ++KKH
Sbjct: 26 LMLGVSDEIRKLYDTLNSLKKFLQDAEKKH 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,924
Number of Sequences: 37544
Number of extensions: 259753
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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