Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_H03
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 98 4e-21
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 81 5e-16
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 81 5e-16
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 81 5e-16
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 32 0.32
AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical ... 30 1.7
AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical ... 30 1.7
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 29 2.9
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 29 3.9
Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical pr... 28 6.8
U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone... 28 6.8
U23515-15|AAK21452.1| 928|Caenorhabditis elegans Kinesin-like p... 27 9.0
L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RET... 27 9.0
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 9.0
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 9.0
AB023497-1|BAA88682.1| 928|Caenorhabditis elegans kinesin like ... 27 9.0
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 98.3 bits (234), Expect = 4e-21
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 9/151 (5%)
Frame = -2
Query: 621 ELKEAAPFAVVASDIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQDLK 442
+L++A PFA++ S+++ E GK++R R+YPWG V+VEN +H+DF LR M+I T++ D+
Sbjct: 240 KLRKALPFAIIGSNMLKEKDGKKIRYREYPWGTVEVENMQHNDFLTLRDMIIRTNLIDMI 299
Query: 441 DVTQDVHYENFRAQCISQISQ---------HAMRERGKLKRDSMGNNNDVVITDTDRLLL 289
DVT++VHYENFR + + + + H ER + ++D N + T++
Sbjct: 300 DVTRNVHYENFRFRQMEGLPKNEKNRDPFTHLEEERRQKEQDLDEKRNTLEKVFTEKTSA 359
Query: 288 QKDEEIRRMQDMLTQMQQKLKASDKKHDSII 196
+K RM + QQ + D K II
Sbjct: 360 RKKRSDERMSALEELEQQNKQKIDAKRAEII 390
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -2
Query: 624 RELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQD 448
+E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR L+ T++ +
Sbjct: 284 KEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLREALLRTNVDE 343
Query: 447 LKDVTQDVHYENFRAQCISQI 385
++ T + YEN+R + Q+
Sbjct: 344 MRQRTHESLYENYRRDRLRQM 364
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -2
Query: 624 RELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQD 448
+E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR L+ T++ +
Sbjct: 284 KEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLREALLRTNVDE 343
Query: 447 LKDVTQDVHYENFRAQCISQI 385
++ T + YEN+R + Q+
Sbjct: 344 MRQRTHESLYENYRRDRLRQM 364
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -2
Query: 624 RELKEAAPFAVVAS-DIVLEMGGKRVRGRQYPWGIVDVENPRHSDFTKLRTMLISTHMQD 448
+E+ ++ PFAVV S D V + G+ VR RQYPWGIV+VEN H DF KLR L+ T++ +
Sbjct: 353 KEMNKSVPFAVVGSIDFVKKENGQMVRARQYPWGIVEVENESHCDFVKLREALLRTNVDE 412
Query: 447 LKDVTQDVHYENFRAQCISQI 385
++ T + YEN+R + Q+
Sbjct: 413 MRQRTHESLYENYRRDRLRQM 433
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 315 ITDTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDSII 196
+T TD + KD+E+R ++ L +M+ + ++KK D +I
Sbjct: 846 VTRTDDEIRAKDDELRATKERLLKMEHDFRENEKKLDQVI 885
>AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical
protein Y44E3B.1b protein.
Length = 295
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -2
Query: 357 KLKRDSMGNNNDVVITDTDR---LLLQKDEEIRRMQDMLTQMQQKLKA 223
KLKR NND V ++ L LQKDEE M+ +TQ++ +L++
Sbjct: 232 KLKR---ARNNDAVRKSRNKAKELQLQKDEEYDEMKKRITQLEAELQS 276
>AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical
protein Y44E3B.1a protein.
Length = 318
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -2
Query: 357 KLKRDSMGNNNDVVITDTDR---LLLQKDEEIRRMQDMLTQMQQKLKA 223
KLKR NND V ++ L LQKDEE M+ +TQ++ +L++
Sbjct: 232 KLKR---ARNNDAVRKSRNKAKELQLQKDEEYDEMKKRITQLEAELQS 276
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -2
Query: 348 RDSMGNNNDVVITDTDRLLLQKDEEIRR-MQDMLTQMQQKLKASDKK 211
++S+ +N+ +I + + L+ D+++RR MQ M M+Q L S KK
Sbjct: 23 QNSIDVSNNQMIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTKK 69
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = -2
Query: 459 HMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVVITDTDRLLLQKD 280
++ DL+++ ++ + + Q Q A ++ + M D +R L +K
Sbjct: 161 NVSDLEEIIKEYSVLKMKEEKEKQCLQMASDSWAMMREEIMEKRE--TNRDLNRQLKEKS 218
Query: 279 EEIRRMQDMLTQMQQKLKASDKKHD 205
EE+ + +L + KLKA +++ D
Sbjct: 219 EELMQKSQILVETTLKLKAVEEERD 243
>Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical
protein C50B6.2 protein.
Length = 582
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = -2
Query: 465 STHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGK-LKRDSMGNNNDVVITDTDRLLL 289
S + Q KD+T+ + + S++ + K DS+ DT +L+
Sbjct: 393 SKYEQAQKDLTEAISIQTVHLPATSRVIANTTHLLAKAFSSDSLFEQAAAHFNDTKNILI 452
Query: 288 QKDEEIRR-MQDMLTQMQQKLKASDKKHDSII 196
K EE+++ ++ + + +++ K+ D II
Sbjct: 453 AKSEELKKQLETVSDDAKSDIQSEIKELDGII 484
>Z81496-6|CAB04070.2| 313|Caenorhabditis elegans Hypothetical
protein F09C6.2 protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 450 DLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVV 316
D K+V+ H+ENF + ++ +Q A++ R L R S + +V
Sbjct: 194 DSKEVSHMFHFENFNIKMLNFDTQAAVKMRDDLMRRSTFKSCSIV 238
>U97009-5|AAC69036.2| 505|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 220 protein.
Length = 505
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 132 LKPTIY*KVVXITQYLWNAIHLLYCRVFYRK 224
L P++ K+V ++W+ H Y FYRK
Sbjct: 312 LHPSLQIKLVQTIWHVWSKAHKCYSTAFYRK 342
>U23515-15|AAK21452.1| 928|Caenorhabditis elegans Kinesin-like
protein protein 6 protein.
Length = 928
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/94 (22%), Positives = 44/94 (46%)
Frame = -2
Query: 483 LRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVVITDT 304
L T+ + + +K T V EN + + ++ + +R + +++ + G+ ++ I
Sbjct: 346 LSTLRFADRAKSIK--TNAVVNENQTERALRELREENLRLQSQIQGGTAGDASNEEIEKL 403
Query: 303 DRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDS 202
R L + +E M++M QQK+ KH S
Sbjct: 404 RRQLAENQKE---MEEMEKSWQQKIAEEAAKHAS 434
>L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RETR-1
protein, isoformc protein.
Length = 517
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 309 DTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHD 205
D +R L +K EE+ + +L + KLKA +++ D
Sbjct: 112 DLNRQLKEKSEELMQKSQILVETTLKLKAVEEERD 146
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 309 DTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHD 205
D +R L +K EE+ + +L + KLKA +++ D
Sbjct: 112 DLNRQLKEKSEELMQKSQILVETTLKLKAVEEERD 146
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 309 DTDRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHD 205
D +R L +K EE+ + +L + KLKA +++ D
Sbjct: 123 DLNRQLKEKSEELMQKSQILVETTLKLKAVEEERD 157
>AB023497-1|BAA88682.1| 928|Caenorhabditis elegans kinesin like
protein KLP-6 protein.
Length = 928
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/94 (22%), Positives = 44/94 (46%)
Frame = -2
Query: 483 LRTMLISTHMQDLKDVTQDVHYENFRAQCISQISQHAMRERGKLKRDSMGNNNDVVITDT 304
L T+ + + +K T V EN + + ++ + +R + +++ + G+ ++ I
Sbjct: 346 LSTLRFADRAKSIK--TNAVVNENQTERALRELREENLRLQSQIQGGTAGDASNEEIEKL 403
Query: 303 DRLLLQKDEEIRRMQDMLTQMQQKLKASDKKHDS 202
R L + +E M++M QQK+ KH S
Sbjct: 404 RRQLAENQKE---MEEMEKSWQQKIAEEAAKHAS 434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,106
Number of Sequences: 27780
Number of extensions: 239976
Number of successful extensions: 767
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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