Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_H02
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   4.6  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    29   4.6  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    29   4.6  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 579 TLIHFSFQGTCYIIFYISLDENLSFFNYYYYCVFNHF 469
           +L+ F  +   YI FY    ++L   N YY C+FN F
Sbjct: 128 SLLVFWIEEVAYIYFYDIFQDSL-LRNSYYSCIFNTF 163


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 544 VTCTLKAKMNQSSLFKNNHLFFGLFSWELLFESN 645
           +  T  +KM   SLF++N   +   SW++LFE +
Sbjct: 400 IVTTRLSKMGYVSLFQHNDFHYPYKSWKILFEQD 433


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 546 YIIFYISLDENLSFFNYYYYC 484
           YI+ YISLD       +Y+YC
Sbjct: 282 YIVHYISLDAQAHVITWYFYC 302


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
           protein T25G3.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -3

Query: 165 LSFNISKKCSY-KCIYLNAAFPLRNVLQKAKLSLYSA 58
           LSF++  +    +C+ L+A FPL  VLQ++ +++ SA
Sbjct: 143 LSFHVFPQLDLARCLVLSACFPLVAVLQRSLVAMVSA 179


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 177 MTTELFGKIKIILRFIASFYKDDFQFYNCRYCF*NYI*QH*KN*LLMRR 323
           +TT++  + K   R+   F KDDF+ Y C     +Y+ +H +N +L+++
Sbjct: 787 LTTDVGTRQKTFERYKKMFEKDDFEMYLC-----DYLKEHGRNDVLLQQ 830


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
           1 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -3

Query: 165 LSFNISKKCSY-KCIYLNAAFPLRNVLQKAKLSLYSA 58
           LSF++  +    +C+ L+A FPL  VLQ++ +++ SA
Sbjct: 143 LSFHVFPQLDLARCLVLSACFPLVAVLQRSLVAMVSA 179


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 220 SSRHFIKMIFNFIIVGTVSETIFSNIKKTD 309
           + + F K +F F+I   + ++IFSN KK++
Sbjct: 335 TKKFFKKNLFFFLIFNNLEKSIFSNFKKSN 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,496,054
Number of Sequences: 27780
Number of extensions: 280556
Number of successful extensions: 782
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)